Cluster no. 243

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Cluster is part of supercluster: 139

Cluster characteristics:

size 3014
size_real 3014
ecount 24298
supercluster 139
annotations_summary 0.10% Class_I/LINE:LINE-RT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.437977099236641
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0948905109489051
satellite_probability 6.66815356895821e-16
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 3 0.00100
Ale Ty1-RT Ale Ty1-RT 1 0.00033

clusters with similarity:

Cluster Number of similarity hits
128 33
94 8
114 2
31 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
128 43 0.0337
311 15 0.0226
114 6 0.00497
736 5 0.00827
3100 5 0.00842
7 4 0.000799
14 4 0.00104
85 4 0.00213
99 4 0.00321
170 4 0.00244
8720 4 0.00676
17 3 0.000481
21 3 0.00106
31 3 0.000547
38 3 0.00172
94 3 0.0034
123 3 0.00189
173 3 0.00281
213 3 0.00181
273 3 0.00295
354 3 0.00438
1120 3 0.00504
1940 3 0.00505
5240 3 0.00504
11100 3 0.00508
45100 3 0.00508
3 2 0.000485
4 2 0.00051
52 2 0.000845
68 2 0.001
126 2 0.00118
162 2 0.00115
177 2 0.00196
186 2 0.00109
198 2 0.00202
205 2 0.00165
215 2 0.00205
3920 2 0.00337
4320 2 0.00336
4750 2 0.00338
7260 2 0.00339
10300 2 0.00338
12600 2 0.00338
28300 2 0.00339
30100 2 0.00338
40300 2 0.00338
74900 2 0.00339
79800 2 0.00339
92900 2 0.00339
147000 2 0.00339
194000 2 0.00339
215000 2 0.00339
249000 2 0.00339
254000 2 0.00339
292000 2 0.00339
302000 2 0.00339
319000 2 0.00339
320000 2 0.00339
336000 2 0.00339
338000 2 0.00339
1 1 0.000249
5 1 0.000474
6 1 0.000233
15 1 0.000347
20 1 0.000254
22 1 0.00031
23 1 0.00035
26 1 0.000386
27 1 0.000536
29 1 0.000428
30 1 0.000243
33 1 0.000538
34 1 0.000347
36 1 0.00048
42 1 0.000429
43 1 0.000322
48 1 0.000268
49 1 0.000449
50 1 0.000461
51 1 0.000296
61 1 0.000461
63 1 0.000286
66 1 0.000301
67 1 0.000373
78 1 0.00033
80 1 0.000527
81 1 0.000361
87 1 0.000537
118 1 0.00073
120 1 0.000541
134 1 0.000551
139 1 0.000601
150 1 0.000647
152 1 0.000435
158 1 0.000656
169 1 0.000767
174 1 0.000612
187 1 0.000829
190 1 0.00075
196 1 0.000616
217 1 0.000913
219 1 0.00113
229 1 0.000836
230 1 0.00134
257 1 0.0014
262 1 0.00156
285 1 0.00139
287 1 0.00149
307 1 0.00143
318 1 0.00129
321 1 0.00153
340 1 0.00154
360 1 0.00142
408 1 0.00148
413 1 0.0015
660 1 0.00162
729 1 0.00166
738 1 0.00167
831 1 0.00164
865 1 0.00164
985 1 0.00166
1010 1 0.00167
1710 1 0.00167
1730 1 0.00168
4150 1 0.00168
4450 1 0.00169
5800 1 0.00169
6410 1 0.00169
6850 1 0.00169
6990 1 0.00168
7330 1 0.00168
8320 1 0.00169
10700 1 0.00169
12200 1 0.00169
14300 1 0.00169
15200 1 0.00169
17600 1 0.00169
18000 1 0.00169
18000 1 0.00169
19100 1 0.00169
20700 1 0.00169
20700 1 0.00169
21700 1 0.00169
24500 1 0.00169
26200 1 0.00169
29900 1 0.00169
31700 1 0.00169
31800 1 0.00169
33900 1 0.00169
34000 1 0.00169
36900 1 0.00169
36900 1 0.00169
38400 1 0.00169
38500 1 0.00169
40200 1 0.00169
47500 1 0.00169
48400 1 0.00169
53600 1 0.0017
56300 1 0.00169
59300 1 0.0017
64100 1 0.0017
65300 1 0.00169
65800 1 0.0017
65800 1 0.00169
66500 1 0.00169
69300 1 0.00169
69500 1 0.0017
69600 1 0.00169
70900 1 0.00169
71100 1 0.0017
74200 1 0.00169
75600 1 0.00169
76100 1 0.0017
76200 1 0.0017
77900 1 0.0017
83700 1 0.00169
84900 1 0.0017
85000 1 0.0017
87200 1 0.00169
97100 1 0.00169
129000 1 0.00169
132000 1 0.00169
137000 1 0.00169
141000 1 0.00169
141000 1 0.00169
142000 1 0.00169
144000 1 0.00169
145000 1 0.00169
147000 1 0.00169
149000 1 0.00169
151000 1 0.00169
159000 1 0.00169
177000 1 0.00169
181000 1 0.00169
191000 1 0.00169
197000 1 0.00169
201000 1 0.00169
204000 1 0.00169
208000 1 0.00169
210000 1 0.00169
216000 1 0.00169
225000 1 0.00169
228000 1 0.00169
249000 1 0.00169
253000 1 0.00169
263000 1 0.00169
269000 1 0.00169
270000 1 0.00169
275000 1 0.00169
276000 1 0.00169
286000 1 0.00169
289000 1 0.00169
290000 1 0.00169
295000 1 0.00169
324000 1 0.00169
328000 1 0.00169
329000 1 0.00169
330000 1 0.00169
333000 1 0.00169
339000 1 0.00169
349000 1 0.00169

CL243 ----> CL128

image

No. of shared pairs: :43

CL243 ----> CL311

image

No. of shared pairs: :15