Cluster no. 245

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Cluster is part of supercluster: 140

Cluster characteristics:

size 2947
size_real 2947
ecount 195280
supercluster 140
annotations_summary 0.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
pair_completeness 0.423671497584541
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00441126569392603
satellite_probability 5.57078696969618e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 4 0.00136
Athila Ty3-RH Athila Ty3-RH 1 0.00034
Reina Ty3-RT Reina Ty3-RT 1 0.00034

clusters with similarity:

Cluster Number of similarity hits
80 2
18 1
24 1
43 1
66 1
79 1
96 1
99 1
139 1
140 1
151 1
179 1
184 1
207 1
226 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
80 12 0.0063
12 11 0.00241
24 8 0.00224
2 7 0.00116
28 7 0.00355
5 6 0.00283
8 6 0.00281
17 6 0.000961
20 6 0.00152
150 6 0.00386
11 5 0.00124
13 5 0.00249
15 5 0.00173
16 5 0.00163
22 5 0.00155
23 5 0.00174
26 5 0.00192
60 5 0.00307
61 5 0.0023
66 5 0.0015
67 5 0.00186
229 5 0.00415
764 5 0.00827
3 4 0.000968
7 4 0.000798
10 4 0.00208
14 4 0.00104
19 4 0.00165
21 4 0.0014
30 4 0.000972
31 4 0.000728
44 4 0.00114
45 4 0.00126
49 4 0.00179
54 4 0.00256
57 4 0.00251
62 4 0.00125
63 4 0.00114
105 4 0.00199
108 4 0.0029
120 4 0.00215
128 4 0.00312
139 4 0.00239
145 4 0.00202
152 4 0.00174
161 4 0.00213
1 3 0.000746
6 3 0.000699
18 3 0.00127
33 3 0.00161
34 3 0.00104
43 3 0.000963
48 3 0.000801
64 3 0.00207
72 3 0.00164
73 3 0.00212
79 3 0.00102
85 3 0.00159
88 3 0.00105
90 3 0.00102
96 3 0.00192
98 3 0.00206
100 3 0.00199
103 3 0.00118
134 3 0.00165
140 3 0.0012
144 3 0.00275
146 3 0.00228
167 3 0.00157
189 3 0.00194
238 3 0.00342
259 3 0.00373
4 2 0.000509
35 2 0.000535
36 2 0.000956
39 2 0.001
42 2 0.000855
47 2 0.000665
50 2 0.000918
51 2 0.000591
52 2 0.000842
53 2 0.00059
58 2 0.00143
69 2 0.00124
71 2 0.000717
74 2 0.000997
75 2 0.000571
76 2 0.00105
77 2 0.0011
81 2 0.00072
83 2 0.00114
84 2 0.00095
86 2 0.000669
92 2 0.00168
101 2 0.000964
102 2 0.000695
107 2 0.00156
110 2 0.00138
114 2 0.00165
115 2 0.000867
116 2 0.000768
117 2 0.00115
121 2 0.00182
127 2 0.00114
130 2 0.000772
133 2 0.000608
151 2 0.00137
156 2 0.00141
162 2 0.00115
168 2 0.00116
172 2 0.00115
179 2 0.00169
183 2 0.00148
187 2 0.00165
196 2 0.00123
205 2 0.00164
226 2 0.0025
227 2 0.00223
239 2 0.00222
256 2 0.0024
12500 2 0.00334
14900 2 0.00334
28700 2 0.00334
79700 2 0.00334
123000 2 0.00335
283000 2 0.00335
9 1 0.000317
25 1 0.000422
27 1 0.000534
29 1 0.000427
32 1 0.000494
37 1 0.000276
38 1 0.00057
41 1 0.000287
46 1 0.000473
55 1 0.000236
56 1 0.00122
59 1 0.000605
65 1 0.000542
70 1 7e-04
78 1 0.000329
82 1 0.000645
87 1 0.000535
89 1 0.000533
91 1 0.000801
93 1 0.000743
109 1 0.000786
112 1 0.000807
124 1 0.000681
125 1 0.000753
126 1 0.000587
129 1 0.000851
135 1 0.00065
136 1 0.000855
137 1 0.00066
138 1 0.000763
147 1 0.000315
148 1 0.000618
149 1 0.000795
153 1 0.000535
154 1 0.000884
160 1 0.000701
165 1 0.00057
171 1 0.000702
175 1 0.000855
177 1 0.000973
181 1 0.000752
182 1 0.000732
184 1 0.001
185 1 0.000729
186 1 0.000542
191 1 0.000659
195 1 0.00104
197 1 0.00067
198 1 0.001
199 1 0.00116
203 1 0.000879
207 1 0.00117
209 1 0.00125
210 1 0.00134
213 1 0.000601
222 1 0.00104
235 1 0.000816
237 1 0.0011
240 1 0.00148
241 1 0.00114
248 1 0.00124
255 1 0.000968
258 1 0.000896
260 1 0.00127
276 1 0.00102
284 1 0.0013
312 1 0.00164
320 1 0.00158
326 1 0.00141
328 1 0.00141
368 1 0.00154
396 1 0.00161
399 1 0.00161
424 1 0.00155
622 1 0.0016
670 1 0.00161
688 1 0.00158
709 1 0.00163
765 1 0.00161
807 1 0.00162
857 1 0.00164
859 1 0.00162
1020 1 0.00162
1080 1 0.00162
1510 1 0.00164
1660 1 0.00166
2110 1 0.00165
2210 1 0.00166
2510 1 0.00165
2640 1 0.00166
2660 1 0.00166
4090 1 0.00166
4210 1 0.00166
4280 1 0.00166
4310 1 0.00167
4580 1 0.00167
4920 1 0.00166
5930 1 0.00167
6160 1 0.00167
8250 1 0.00167
8310 1 0.00167
13700 1 0.00167
14500 1 0.00167
14800 1 0.00167
15100 1 0.00167
15500 1 0.00167
15500 1 0.00167
17900 1 0.00167
18900 1 0.00167
20800 1 0.00167
22400 1 0.00167
24200 1 0.00167
25500 1 0.00167
27200 1 0.00167
28400 1 0.00167
31900 1 0.00167
40400 1 0.00167
40800 1 0.00167
43300 1 0.00167
43500 1 0.00167
47900 1 0.00168
48800 1 0.00167
48900 1 0.00167
49000 1 0.00168
59800 1 0.00167
61700 1 0.00167
62500 1 0.00167
66300 1 0.00167
68600 1 0.00167
70700 1 0.00167
73000 1 0.00167
77200 1 0.00167
81200 1 0.00168
82000 1 0.00167
84200 1 0.00168
87800 1 0.00167
111000 1 0.00167
112000 1 0.00167
142000 1 0.00167
152000 1 0.00167
153000 1 0.00167
156000 1 0.00167
164000 1 0.00167
169000 1 0.00167
180000 1 0.00167
190000 1 0.00167
190000 1 0.00167
197000 1 0.00167
207000 1 0.00167
217000 1 0.00167
225000 1 0.00167
225000 1 0.00167
226000 1 0.00167
227000 1 0.00167
232000 1 0.00167
233000 1 0.00167
238000 1 0.00167
256000 1 0.00167
272000 1 0.00167
272000 1 0.00167
283000 1 0.00167
284000 1 0.00167
286000 1 0.00167
293000 1 0.00167
304000 1 0.00167

CL245 ----> CL80

image

No. of shared pairs: :12

CL245 ----> CL12

image

No. of shared pairs: :11