Cluster no. 246

Go back to cluster table

Cluster is part of supercluster: 30

Cluster characteristics:

size 2901
size_real 2901
ecount 51899
supercluster 30
annotations_summary 99.90% organelle/plastid
pair_completeness 0.894839973873285
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000344708721130645
satellite_probability 3.92929639329527e-24
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2898 1

clusters with similarity:

Cluster Number of similarity hits
131 46
192 14
201 2
150 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
131 41 0.121
192 27 0.141
201 9 0.0496
145 2 0.00137
191 2 0.002
1 1 0.000285
2 1 0.000181
4 1 0.000293
5 1 0.000625
7 1 0.000222
8 1 0.000618
9 1 0.000379
10 1 0.00071
15 1 0.000421
16 1 0.000393
34 1 0.000421
39 1 0.000678
40 1 0.000282
42 1 0.000548
43 1 0.000385
49 1 0.000582
53 1 0.000348
54 1 0.000957
59 1 0.00088
68 1 0.000674
74 1 0.000671
77 1 0.000767
80 1 0.00072
82 1 0.000967
88 1 0.000429
89 1 0.000736
91 1 0.00136
92 1 0.00148
97 1 0.000625
116 1 0.000479
120 1 0.000746
130 1 0.000482
150 1 0.000964
152 1 0.000559
153 1 0.00074
156 1 0.00111
165 1 0.000807
188 1 0.00536
214 1 0.00256
215 1 0.00213
247 1 0.00176
254 1 0.00465
275 1 0.00697
330 1 0.00855
461 1 0.0073
3730 1 0.0114
5440 1 0.0117
30700 1 0.0121
44300 1 0.0123
53500 1 0.0122

CL246 ----> CL131

image

No. of shared pairs: :41

CL246 ----> CL192

image

No. of shared pairs: :27