Cluster no. 247

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Cluster is part of supercluster: 141

Cluster characteristics:

size 2886
size_real 2886
ecount 13242
supercluster 141
annotations_summary 1.91% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-GAG
0.38% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.17% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-PROT
0.14% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
0.03% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-GAG
pair_completeness 0.493788819875776
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00485100485100485
satellite_probability 2.89707838193454e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Gymco-I Ty1-GAG Gymco-I Ty1-GAG 1 0.00035
Gymco-II Ty1-GAG Gymco-II Ty1-GAG 55 0.01906
Gymco-II Ty1-PROT Gymco-II Ty1-PROT 5 0.00173
Ikeros Ty1-PROT Ikeros Ty1-PROT 1 0.00035
Ivana Ty1-PROT Ivana Ty1-PROT 11 0.00381
SIRE Ty1-PROT SIRE Ty1-PROT 4 0.00139

clusters connected through mates:

Cluster Number of shared
read pairs
k
823 17 0.033
2 9 0.00152
120 8 0.00457
30 6 0.0015
38 6 0.00364
81 5 0.00187
543 5 0.0097
3460 5 0.0101
24100 5 0.0102
17 4 0.000652
189 4 0.00279
444 4 0.00753
4150 4 0.00811
20 3 0.000783
23 3 0.00109
31 3 0.000557
44 3 0.000881
78 3 0.00102
143 3 0.00181
4450 3 0.00606
27900 3 0.0061
3 2 0.000497
18 2 0.000888
40 2 0.000506
43 2 0.000665
48 2 0.00055
58 2 0.00155
94 2 0.00255
126 2 0.00125
130 2 0.000805
161 2 0.00113
196 2 0.00131
429 2 0.00374
4240 2 0.00404
5860 2 0.00404
7670 2 0.00407
10800 2 0.00407
19100 2 0.00408
28600 2 0.00407
199000 2 0.00408
259000 2 0.00408
269000 2 0.00408
275000 2 0.00408
279000 2 0.00408
289000 2 0.00408
6 1 0.000239
7 1 0.000204
8 1 0.000493
9 1 0.000328
11 1 0.000254
14 1 0.000267
21 1 0.000365
22 1 0.00032
26 1 0.000401
27 1 0.000567
34 1 0.000359
42 1 0.000448
45 1 0.000325
46 1 0.000498
47 1 0.000345
50 1 0.000483
51 1 0.000305
59 1 0.000647
60 1 0.000657
62 1 0.000323
63 1 0.000294
65 1 0.000576
66 1 0.00031
72 1 0.000582
84 1 0.000501
85 1 0.000562
89 1 0.000566
98 1 0.00074
102 1 0.000361
106 1 0.00054
110 1 0.000748
115 1 0.000455
118 1 0.000788
128 1 0.00085
136 1 0.000942
142 1 0.000773
147 1 0.000327
158 1 0.000702
162 1 0.00061
166 1 0.000868
170 1 0.000649
171 1 0.000759
173 1 0.00103
178 1 0.00106
179 1 0.000928
200 1 0.00076
202 1 0.00126
205 1 9e-04
210 1 0.00157
242 1 0.00106
246 1 0.00176
259 1 0.00144
278 1 0.00161
307 1 0.00166
367 1 0.00181
422 1 0.00191
500 1 0.00192
650 1 0.00196
811 1 0.00197
831 1 0.00196
1960 1 0.00201
2860 1 0.00201
3380 1 0.00202
5450 1 0.00202
7230 1 0.00203
9030 1 0.00203
13200 1 0.00203
13600 1 0.00203
13600 1 0.00203
13800 1 0.00203
15800 1 0.00203
17800 1 0.00204
18000 1 0.00203
18200 1 0.00204
18400 1 0.00203
19500 1 0.00204
20500 1 0.00203
22500 1 0.00203
23600 1 0.00204
24600 1 0.00204
25500 1 0.00203
26300 1 0.00204
29400 1 0.00204
30900 1 0.00204
34500 1 0.00204
35200 1 0.00204
35300 1 0.00204
36200 1 0.00204
38400 1 0.00204
41000 1 0.00204
45000 1 0.00204
47200 1 0.00204
49400 1 0.00204
50700 1 0.00204
53400 1 0.00204
54700 1 0.00204
56100 1 0.00204
58500 1 0.00204
59200 1 0.00204
60900 1 0.00204
63700 1 0.00204
67000 1 0.00204
68600 1 0.00204
69400 1 0.00204
69800 1 0.00204
71000 1 0.00204
71200 1 0.00204
74900 1 0.00204
77400 1 0.00204
77900 1 0.00204
79000 1 0.00204
79500 1 0.00204
79900 1 0.00204
80300 1 0.00204
84700 1 0.00204
130000 1 0.00204
143000 1 0.00204
147000 1 0.00204
157000 1 0.00204
183000 1 0.00204
184000 1 0.00204
186000 1 0.00204
190000 1 0.00204
194000 1 0.00204
194000 1 0.00204
196000 1 0.00204
209000 1 0.00204
216000 1 0.00204
223000 1 0.00204
231000 1 0.00204
233000 1 0.00204
239000 1 0.00204
252000 1 0.00204
255000 1 0.00204
271000 1 0.00204
286000 1 0.00204
286000 1 0.00204
290000 1 0.00204
299000 1 0.00204
3e+05 1 0.00204
303000 1 0.00204
304000 1 0.00204
304000 1 0.00204
319000 1 0.00204
330000 1 0.00204
340000 1 0.00204
343000 1 0.00204
344000 1 0.00204

CL247 ----> CL823

image

No. of shared pairs: :17