Cluster no. 248

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Cluster is part of supercluster: 142

Cluster characteristics:

size 2872
size_real 2872
ecount 57393
supercluster 142
annotations_summary
pair_completeness 0.746958637469586
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00139275766016713
satellite_probability 6.84243327814155e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
50 321

clusters connected through mates:

Cluster Number of shared
read pairs		 k
50 119 0.0665
3640 4 0.0186
1620 3 0.0136
2870 3 0.0139
18800 3 0.0142
8 2 0.00115
22 2 0.000703
34 2 0.000799
96 2 0.0017
106 2 0.00127
148 2 0.00163
210 2 0.0056
422 2 0.00828
16100 2 0.00955
36500 2 0.00952
161000 2 0.00957
213000 2 0.00957
2 1 0.000177
3 1 0.000267
6 1 0.000256
7 1 0.000216
10 1 0.000651
13 1 0.000617
16 1 0.000374
20 1 0.000282
23 1 0.000403
35 1 0.000299
44 1 0.00032
65 1 0.000687
73 1 0.000975
76 1 0.000661
77 1 0.000699
78 1 0.000377
85 1 0.000668
95 1 0.000881
97 1 0.000579
117 1 0.000739
119 1 0.00136
125 1 0.00106
134 1 0.000698
147 1 0.00036
157 1 0.00104
158 1 0.000875
183 1 0.00104
188 1 0.00318
237 1 0.00192
238 1 0.00204
245 1 0.00124
254 1 0.00292
255 1 0.00155
273 1 0.00157
464 1 0.00402
518 1 0.00388
1460 1 0.0045
1850 1 0.00463
4340 1 0.00466
5680 1 0.00472
14300 1 0.00473
17800 1 0.00478
18700 1 0.00476
19700 1 0.00476
21900 1 0.00477
31300 1 0.00476
34700 1 0.00478
41400 1 0.00478
50900 1 0.00477
54200 1 0.0048
55200 1 0.00477
60900 1 0.00477
62000 1 0.0048
63900 1 0.00477
64000 1 0.0048
67700 1 0.0048
99100 1 0.00478
107000 1 0.00478
110000 1 0.00478
156000 1 0.00478
157000 1 0.00478
165000 1 0.00478
169000 1 0.00478
171000 1 0.00478
227000 1 0.00478
287000 1 0.00478
289000 1 0.00478

CL248 ----> CL50

image

No. of shared pairs: :119