Cluster no. 249

Go back to cluster table

Cluster is part of supercluster: 143

Cluster characteristics:

size 2847
size_real 2847
ecount 25486
supercluster 143
annotations_summary 0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
pair_completeness 0.707858428314337
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000351246926589392
satellite_probability 1.39099901770407e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 2 7e-04
TatII Ty3-GAG TatII Ty3-GAG 2 7e-04

clusters with similarity:

Cluster Number of similarity hits
68 2

clusters connected through mates:

Cluster Number of shared
read pairs
k
68 15 0.00911
2 9 0.00158
78 9 0.00335
677 9 0.0356
51 8 0.00264
122 5 0.0035
13000 5 0.0203
85 4 0.00261
1750 4 0.0157
1950 4 0.016
3410 4 0.0162
8510 4 0.0162
18 3 0.0015
49 3 0.00159
143 3 0.00213
619 3 0.0117
1580 3 0.0118
7760 3 0.0121
13600 3 0.0122
15900 3 0.0121
28100 3 0.0122
3 2 0.000529
17 2 0.00034
25 2 0.000993
30 2 0.000532
63 2 0.000634
126 2 0.00148
158 2 0.0017
173 2 0.00276
213 2 0.00153
290 2 0.00649
404 2 0.00725
2750 2 0.00798
4060 2 0.00806
7080 2 0.00808
9940 2 0.0081
11200 2 0.00811
17300 2 0.00815
18000 2 0.00818
22400 2 0.00813
28400 2 0.00816
40700 2 0.00815
64100 2 0.00816
69900 2 0.00816
80800 2 0.00816
6 1 0.000254
10 1 0.000637
11 1 0.000271
12 1 0.000238
14 1 0.000285
19 1 0.000484
34 1 0.000394
37 1 0.000306
40 1 0.00027
48 1 0.000295
50 1 0.000548
54 1 0.000828
57 1 0.000806
73 1 0.000943
74 1 0.000605
75 1 0.000317
81 1 0.000412
82 1 0.000835
97 1 0.000567
100 1 0.000864
112 1 0.00113
117 1 0.00072
128 1 0.00107
132 1 0.00103
138 1 0.00104
142 1 0.000954
151 1 9e-04
155 1 0.00104
182 1 0.000987
189 1 0.000841
211 1 0.00134
233 1 0.00252
251 1 0.00241
255 1 0.00147
271 1 0.00292
277 1 0.00268
295 1 0.00245
327 1 0.00293
609 1 0.00374
651 1 0.00364
706 1 0.00375
845 1 0.0038
892 1 0.00381
1920 1 0.00403
5170 1 0.00402
5800 1 0.00405
6150 1 0.00405
8140 1 0.00404
10200 1 0.00405
12200 1 0.00404
12900 1 0.00407
14200 1 0.00407
20900 1 0.00409
21100 1 0.0041
27400 1 0.00407
27600 1 0.00408
29600 1 0.00407
33700 1 0.00409
35100 1 0.00409
36900 1 0.00409
37100 1 0.00407
42700 1 0.00409
43400 1 0.00409
48600 1 0.00408
48700 1 0.00408
52400 1 0.00408
55600 1 0.00408
57600 1 0.0041
58700 1 0.00408
67700 1 0.0041
72700 1 0.00408
73400 1 0.0041
80700 1 0.0041
85000 1 0.0041
106000 1 0.00409
111000 1 0.00409
120000 1 0.00409
130000 1 0.00409
137000 1 0.00409
137000 1 0.00409
154000 1 0.00409
185000 1 0.00409
196000 1 0.00409
204000 1 0.00409
215000 1 0.00409
222000 1 0.00409
244000 1 0.00409
250000 1 0.00409
256000 1 0.00409
311000 1 0.00409
328000 1 0.00409
343000 1 0.00409

CL249 ----> CL68

image

No. of shared pairs: :15