Cluster no. 250

Go back to cluster table

Cluster is part of supercluster: 144

Cluster characteristics:

size 2825
size_real 2825
ecount 57606
supercluster 144
annotations_summary 0.35% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
pair_completeness 0.803959131545338
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.103716814159292
satellite_probability 9.96330308740109e-18
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 10 0.00354
CRM Ty3-INT CRM Ty3-INT 1 0.00035

clusters with similarity:

Cluster Number of similarity hits
94 51
17 1
165 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
94 23 0.0514
2760 7 0.0433
374 5 0.0274
1230 5 0.0309
6 3 0.00078
14 3 0.000879
17 3 0.000517
15600 3 0.0192
2 2 0.000357
5 2 0.00119
13 2 0.00128
23 2 0.000825
28 2 0.00131
29 2 0.00105
97 2 0.0012
109 2 0.00241
134 2 0.00145
165 2 0.00152
170 2 0.00166
176 2 0.00316
195 2 0.00388
115000 2 0.0129
136000 2 0.0129
3 1 0.000271
4 1 0.000287
11 1 0.000278
22 1 0.000358
26 1 0.000464
32 1 0.000633
35 1 0.000304
40 1 0.000276
42 1 0.000527
44 1 0.000326
48 1 0.000303
61 1 0.000576
66 1 0.000346
67 1 0.000446
70 1 0.00102
76 1 0.000686
79 1 0.000401
81 1 0.000428
84 1 0.000602
86 1 0.000392
89 1 0.000698
98 1 0.000985
99 1 0.00123
100 1 0.000937
105 1 0.000638
106 1 0.000659
112 1 0.00126
113 1 0.00071
119 1 0.00147
121 1 0.00153
123 1 0.000865
126 1 0.000793
142 1 0.00104
146 1 0.00115
148 1 0.000851
150 1 0.000901
151 1 0.000979
155 1 0.00115
157 1 0.0011
159 1 0.00107
162 1 0.000767
167 1 0.000683
173 1 0.00158
178 1 0.00163
190 1 0.00111
191 1 0.000931
219 1 0.00222
228 1 0.00259
235 1 0.00128
257 1 0.00362
264 1 0.00265
2660 1 0.00621
14200 1 0.00637
25100 1 0.00649
29500 1 0.00643
31000 1 0.00647
39300 1 0.00643
65400 1 0.00645
80200 1 0.00649
81300 1 0.00645
81500 1 0.00649
85300 1 0.00647
103000 1 0.00647
127000 1 0.00647
127000 1 0.00647
150000 1 0.00647
152000 1 0.00647
178000 1 0.00647
216000 1 0.00647
238000 1 0.00647
314000 1 0.00647
343000 1 0.00647

CL250 ----> CL94

image

No. of shared pairs: :23