Cluster no. 252

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Cluster is part of supercluster: 22

Cluster characteristics:

size 2710
size_real 2710
ecount 114721
supercluster 22
annotations_summary 0.52% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-GAG
pair_completeness 0.66871921182266
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0014760147601476
satellite_probability 2.69560262167269e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-GAG Reina Ty3-GAG 14 0.0052

clusters with similarity:

Cluster Number of similarity hits
134 502
91 57
205 23

clusters connected through mates:

Cluster Number of shared
read pairs		 k
134 171 0.114
205 130 0.146
91 63 0.0684
48 3 0.000878
14100 3 0.011
17600 3 0.0111
32100 3 0.0111
5 2 0.00112
7 2 0.000427
17 2 0.000338
47 2 0.000746
84 2 0.00113
179 2 0.00233
35900 2 0.00738
99800 2 0.00741
120000 2 0.00741
186000 2 0.00741
1 1 0.000271
3 1 0.000263
6 1 0.000252
14 1 0.000283
15 1 0.00039
29 1 0.000496
30 1 0.000264
31 1 0.000194
33 1 0.00065
34 1 0.00039
43 1 0.000359
45 1 0.000351
67 1 0.000424
72 1 0.000667
75 1 0.000315
83 1 0.000703
90 1 0.000383
93 1 0.000982
98 1 0.000885
99 1 0.00108
107 1 0.00105
109 1 0.00106
126 1 0.000726
128 1 0.00105
142 1 0.000932
148 1 0.000775
149 1 0.00107
150 1 0.000816
153 1 0.000649
154 1 0.00124
178 1 0.00137
227 1 0.00176
229 1 0.00114
281 1 0.00287
458 1 0.00311
749 1 0.00364
1660 1 0.00363
49700 1 0.00371
51600 1 0.0037
74200 1 0.0037
125000 1 0.0037
136000 1 0.0037
157000 1 0.0037
222000 1 0.0037
283000 1 0.0037
289000 1 0.0037
341000 1 0.0037

CL252 ----> CL134

image

No. of shared pairs: :171

CL252 ----> CL205

image

No. of shared pairs: :130

CL252 ----> CL91

image

No. of shared pairs: :63