Cluster no. 255

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Cluster is part of supercluster: 148

Cluster characteristics:

size 2620
size_real 2620
ecount 7135
supercluster 148
annotations_summary 0.11% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.11% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
pair_completeness 0.499713795077275
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000381679389312977
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 3 0.00115
TatII Ty3-GAG TatII Ty3-GAG 1 0.00038
TatV Ty3-GAG TatV Ty3-GAG 3 0.00115
CRM Ty3-INT CRM Ty3-INT 1 0.00038

clusters with similarity:

Cluster Number of similarity hits
2 1
161 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
1440 13 0.0288
2 10 0.0017
17 8 0.00132
958 5 0.011
1820 5 0.0112
12100 5 0.0114
3890 4 0.00905
9880 4 0.00908
15 3 0.0011
30 3 0.000758
150 3 0.00215
189 3 0.00217
1740 3 0.00673
1760 3 0.00672
2350 3 0.00671
2920 3 0.00678
5790 3 0.0068
8480 3 0.00682
10100 3 0.00683
13300 3 0.00681
15000 3 0.00681
22600 3 0.00683
26400 3 0.00683
41400 3 0.00683
3 2 0.000503
11 2 0.000515
16 2 0.00069
18 2 0.00091
19 2 0.000886
37 2 0.000578
40 2 0.000512
55 2 0.00049
63 2 0.000598
85 2 0.00116
89 2 0.00117
161 2 0.00116
200 2 0.00158
2120 2 0.0045
6150 2 0.00454
6260 2 0.00454
10400 2 0.00455
10800 2 0.00455
12800 2 0.00454
15400 2 0.00454
19100 2 0.00456
25000 2 0.00456
29000 2 0.00455
33100 2 0.00456
35100 2 0.00456
42600 2 0.00456
45100 2 0.00457
49800 2 0.00456
61300 2 0.00456
65500 2 0.00456
65800 2 0.00456
71800 2 0.00456
80400 2 0.00456
99800 2 0.00457
104000 2 0.00457
126000 2 0.00457
130000 2 0.00457
147000 2 0.00457
192000 2 0.00457
220000 2 0.00457
223000 2 0.00457
276000 2 0.00457
313000 2 0.00457
328000 2 0.00457
1 1 0.000259
8 1 0.000506
9 1 0.000334
20 1 0.000264
21 1 0.000372
22 1 0.000325
24 1 0.000293
25 1 0.000453
31 1 0.000187
34 1 0.000366
45 1 0.000331
47 1 0.000351
48 1 0.000279
53 1 0.000309
58 1 0.000806
59 1 0.00067
64 1 0.000775
65 1 0.000593
66 1 0.000315
67 1 0.000396
78 1 0.000347
86 1 0.000353
87 1 0.000585
95 1 0.000733
104 1 0.000805
120 1 0.000589
126 1 0.000647
130 1 0.000411
131 1 0.00144
134 1 0.000602
144 1 0.00108
153 1 0.000585
157 1 0.000838
162 1 0.00063
164 1 0.00154
170 1 0.000672
172 1 0.000633
174 1 0.000675
175 1 0.00099
185 1 0.000825
198 1 0.00119
238 1 0.00139
245 1 0.000968
248 1 0.00155
249 1 0.00147
288 1 0.00147
426 1 0.00196
953 1 0.00224
1830 1 0.00224
2270 1 0.00225
2380 1 0.00224
4360 1 0.00225
6250 1 0.00227
7530 1 0.00227
8890 1 0.00228
8960 1 0.00227
11000 1 0.00228
11800 1 0.00227
12100 1 0.00228
12800 1 0.00228
14000 1 0.00228
16600 1 0.00228
20200 1 0.00227
23500 1 0.00228
24200 1 0.00228
25300 1 0.00228
26100 1 0.00228
28700 1 0.00228
30800 1 0.00228
32100 1 0.00228
35100 1 0.00228
39600 1 0.00228
44200 1 0.00228
48300 1 0.00228
49600 1 0.00228
51200 1 0.00229
52000 1 0.00228
52100 1 0.00229
54000 1 0.00228
59300 1 0.00229
61700 1 0.00229
64900 1 0.00229
66100 1 0.00228
67200 1 0.00229
67800 1 0.00228
68000 1 0.00229
69000 1 0.00228
69400 1 0.00228
78100 1 0.00229
78800 1 0.00229
79000 1 0.00228
79000 1 0.00228
81000 1 0.00228
81500 1 0.00228
81700 1 0.00229
83300 1 0.00228
83700 1 0.00228
88300 1 0.00228
99500 1 0.00228
101000 1 0.00228
115000 1 0.00228
121000 1 0.00228
130000 1 0.00228
132000 1 0.00228
141000 1 0.00228
144000 1 0.00228
145000 1 0.00228
155000 1 0.00228
156000 1 0.00228
158000 1 0.00228
161000 1 0.00228
163000 1 0.00228
164000 1 0.00228
168000 1 0.00228
176000 1 0.00228
190000 1 0.00228
206000 1 0.00228
211000 1 0.00228
219000 1 0.00228
231000 1 0.00228
247000 1 0.00228
247000 1 0.00228
247000 1 0.00228
258000 1 0.00228
271000 1 0.00228
288000 1 0.00228
291000 1 0.00228
308000 1 0.00228
317000 1 0.00228
337000 1 0.00228
337000 1 0.00228
338000 1 0.00228
340000 1 0.00228
349000 1 0.00228

CL255 ----> CL1439

image

No. of shared pairs: :13

CL255 ----> CL2

image

No. of shared pairs: :10