Cluster no. 256

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Cluster is part of supercluster: 149

Cluster characteristics:

size 2559
size_real 2559
ecount 16828
supercluster 149
annotations_summary 0.23% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.16% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.04% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.04% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
pair_completeness 0.687994722955145
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0382962094568191
satellite_probability 9.4044097376133e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Helitron Helitron-HEL2 Helitron Helitron-HEL2 6 0.00234
Gymco-I Ty1-INT Gymco-I Ty1-INT 1 0.00039
Ivana Ty1-INT Ivana Ty1-INT 1 0.00039
Tork Ty1-INT Tork Ty1-INT 4 0.00156

clusters with similarity:

Cluster Number of similarity hits
98 7
38 5
234 2
118 1
216 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
38 8 0.00573
1890 8 0.0324
216 7 0.0139
1130 6 0.0246
799 5 0.0203
170 4 0.00311
1290 4 0.0166
11000 4 0.0167
13000 4 0.0166
98 3 0.00273
234 3 0.00757
328 3 0.00857
1480 3 0.0123
2320 3 0.0124
4760 3 0.0124
10800 3 0.0125
15300 3 0.0126
17500 3 0.0126
2 2 0.000352
14 2 0.000572
15 2 0.000789
82 2 0.00168
245 2 0.0024
443 2 0.0078
576 2 0.00794
1400 2 0.00833
3080 2 0.00828
4620 2 0.00832
4700 2 0.00835
5660 2 0.00832
7390 2 0.0084
9020 2 0.00839
9380 2 0.00837
11500 2 0.00835
13100 2 0.00837
16900 2 0.00842
17300 2 0.00835
24000 2 0.0084
25200 2 0.0084
26100 2 0.00837
35300 2 0.00839
35400 2 0.00842
47500 2 0.0084
65100 2 0.0084
73500 2 0.0084
78500 2 0.0084
79300 2 0.0084
80600 2 0.0084
113000 2 0.00842
170000 2 0.00842
177000 2 0.00842
178000 2 0.00842
196000 2 0.00842
228000 2 0.00842
232000 2 0.00842
311000 2 0.00842
332000 2 0.00842
348000 2 0.00842
3 1 0.000265
6 1 0.000254
16 1 0.000371
20 1 0.000279
22 1 0.000348
26 1 0.000446
28 1 0.000619
37 1 0.000307
39 1 0.000613
40 1 0.00027
41 1 0.000321
44 1 0.000317
47 1 0.000378
48 1 0.000295
50 1 0.00055
52 1 0.000496
64 1 0.000917
66 1 0.000337
88 1 0.000402
91 1 0.00112
94 1 0.00189
102 1 0.000397
114 1 0.00117
115 1 0.000514
117 1 0.000724
118 1 0.000983
135 1 0.000849
147 1 0.000356
154 1 0.0013
157 1 0.00101
159 1 0.00098
175 1 0.00123
180 1 0.00157
189 1 0.000846
190 1 0.00102
192 1 0.00288
217 1 0.00135
232 1 0.0016
244 1 0.00291
298 1 0.00337
419 1 0.00379
462 1 0.00398
667 1 0.00399
881 1 0.004
902 1 0.00407
1290 1 0.00418
1340 1 0.00413
2170 1 0.00409
2430 1 0.00415
2730 1 0.00414
2740 1 0.00414
3150 1 0.00413
3580 1 0.00413
5380 1 0.00421
5490 1 0.00418
5510 1 0.00414
5600 1 0.00419
6060 1 0.00415
6210 1 0.0042
6840 1 0.00419
7300 1 0.00417
9410 1 0.00417
10800 1 0.00417
12300 1 0.00421
12500 1 0.00418
12600 1 0.00419
12700 1 0.00418
14000 1 0.00418
15400 1 0.00418
16200 1 0.00418
18400 1 0.00419
19800 1 0.00419
20900 1 0.00419
25400 1 0.0042
26300 1 0.00418
26400 1 0.0042
27800 1 0.00418
28000 1 0.0042
28700 1 0.0042
32900 1 0.00419
35500 1 0.00421
39600 1 0.00421
49200 1 0.0042
51200 1 0.0042
55400 1 0.0042
56100 1 0.00422
67300 1 0.0042
68500 1 0.0042
68600 1 0.00422
72300 1 0.00422
76000 1 0.0042
76200 1 0.0042
76600 1 0.00422
78000 1 0.0042
82900 1 0.00422
90600 1 0.00421
90700 1 0.00421
97500 1 0.00421
102000 1 0.00421
114000 1 0.00421
117000 1 0.00421
117000 1 0.00421
136000 1 0.00421
146000 1 0.00421
175000 1 0.00421
181000 1 0.00421
194000 1 0.00421
194000 1 0.00421
195000 1 0.00421
202000 1 0.00421
207000 1 0.00421
219000 1 0.00421
235000 1 0.00421
236000 1 0.00421
236000 1 0.00421
237000 1 0.00421
257000 1 0.00421
265000 1 0.00421
271000 1 0.00421
278000 1 0.00421
280000 1 0.00421
284000 1 0.00421
285000 1 0.00421
288000 1 0.00421
307000 1 0.00421
308000 1 0.00421
313000 1 0.00421
321000 1 0.00421
325000 1 0.00421
333000 1 0.00421
335000 1 0.00421
336000 1 0.00421