Cluster no. 259

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Cluster is part of supercluster: 114

Cluster characteristics:

size 2404
size_real 2404
ecount 13265
supercluster 114
annotations_summary 5.53% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.706174591909155
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000415973377703827
satellite_probability 1.39099901770407e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 2 0.00083
TatII Ty3-GAG TatII Ty3-GAG 133 0.05532

clusters with similarity:

Cluster Number of similarity hits
38 4

clusters connected through mates:

Cluster Number of shared
read pairs
k
269 40 0.118
420 29 0.107
2680 8 0.0375
12200 5 0.0237
33 4 0.00271
27700 4 0.0191
30 3 0.000805
38 3 0.0022
67 3 0.00131
245 3 0.00373
3190 3 0.014
43300 3 0.0144
55400 3 0.0144
1 2 0.000551
10 2 0.0013
11 2 0.000547
12 2 0.00048
22 2 0.000703
25 2 0.00101
32 2 0.00122
43 2 0.000734
98 2 0.00187
102 2 0.000803
110 2 0.00189
128 2 0.00224
154 2 0.0027
175 2 0.00256
264 2 0.00463
9890 2 0.00955
39300 2 0.00957
46400 2 0.00959
57600 2 0.00959
63500 2 0.00959
128000 2 0.00962
250000 2 0.00962
278000 2 0.00962
288000 2 0.00962
346000 2 0.00962
5 1 0.000579
6 1 0.000256
13 1 0.000617
15 1 0.000399
18 1 0.000508
28 1 0.000631
31 1 0.000196
34 1 4e-04
39 1 0.000624
40 1 0.000272
44 1 0.00032
48 1 0.000298
49 1 0.000542
65 1 0.000687
68 1 0.000621
74 1 0.000619
77 1 7e-04
81 1 0.000419
85 1 0.000668
93 1 0.00105
104 1 0.000989
115 1 0.000522
131 1 0.00215
134 1 0.000699
141 1 0.000702
142 1 0.000989
143 1 0.000729
148 1 0.000814
152 1 0.000522
153 1 0.000677
156 1 0.000974
164 1 0.0024
172 1 0.00074
182 1 0.00102
185 1 0.00102
193 1 0.00153
210 1 0.00281
220 1 0.00169
226 1 0.00243
229 1 0.00123
236 1 0.00387
242 1 0.0015
247 1 0.00144
263 1 0.00145
275 1 0.0037
358 1 0.00394
388 1 0.00382
593 1 0.00401
679 1 0.00466
864 1 0.00437
1990 1 0.00467
2020 1 0.0046
5260 1 0.00472
11300 1 0.00478
18400 1 0.00478
33700 1 0.00478
42400 1 0.00481
49500 1 0.00482
51400 1 0.00482
52700 1 0.00482
56500 1 0.0048
65300 1 0.00482
67500 1 0.00482
72700 1 0.00482
76500 1 0.0048
96600 1 0.00481
120000 1 0.00481
130000 1 0.00481
158000 1 0.00481
168000 1 0.00481
206000 1 0.00481
233000 1 0.00481
302000 1 0.00481
339000 1 0.00481

CL259 ----> CL269

image

No. of shared pairs: :40

CL259 ----> CL420

image

No. of shared pairs: :29