Cluster no. 260

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Cluster is part of supercluster: 151

Cluster characteristics:

size 2396
size_real 2396
ecount 21711
supercluster 151
annotations_summary 0.67% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
pair_completeness 0.721264367816092
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00125208681135225
satellite_probability 1.17014641654426e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-CHDII Tekay Ty3-CHDII 16 0.0067

clusters with similarity:

Cluster Number of similarity hits
94 6
17 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
8050 8 0.0402
294 7 0.0198
2330 7 0.0347
1480 6 0.0292
32200 4 0.0204
17 3 0.000514
3460 3 0.015
11700 3 0.0152
18500 3 0.0152
37400 3 0.0153
6 2 0.000514
19 2 0.000993
45 2 0.00072
122 2 0.00145
128 2 0.00227
134 2 0.00141
158 2 0.00177
161 2 0.00135
217 2 0.00286
2850 2 0.00998
25200 2 0.0102
28600 2 0.0102
41200 2 0.0103
48800 2 0.0102
101000 2 0.0103
236000 2 0.0103
317000 2 0.0103
332000 2 0.0103
345000 2 0.0103
8 1 0.000577
9 1 0.000363
12 1 0.000241
24 1 0.000315
28 1 0.000636
31 1 0.000196
32 1 0.000617
35 1 3e-04
40 1 0.000273
55 1 0.000261
66 1 0.000342
72 1 0.000702
79 1 0.000394
85 1 0.000674
94 1 0.00205
96 1 0.00086
100 1 0.000903
108 1 0.00102
114 1 0.00123
123 1 0.000836
131 1 0.00221
140 1 0.000478
165 1 0.000739
167 1 0.000665
182 1 0.00104
193 1 0.00156
200 1 0.000979
245 1 0.00127
265 1 0.00316
267 1 0.00177
551 1 0.0046
1020 1 0.00471
1460 1 0.00483
2000 1 0.00495
7020 1 0.0051
7520 1 0.00506
7890 1 0.00504
10200 1 0.00512
11800 1 0.00505
26500 1 0.00512
36000 1 0.0051
43500 1 0.00513
44300 1 0.00513
45700 1 0.00512
55000 1 0.00512
60000 1 0.00512
61500 1 0.00512
63200 1 0.00514
68300 1 0.00514
72900 1 0.00512
77300 1 0.00512
88100 1 0.00513
119000 1 0.00513
150000 1 0.00513
164000 1 0.00513
176000 1 0.00513
178000 1 0.00513
199000 1 0.00513
202000 1 0.00513
205000 1 0.00513
223000 1 0.00513
251000 1 0.00513
259000 1 0.00513
269000 1 0.00513
285000 1 0.00513
288000 1 0.00513
304000 1 0.00513
322000 1 0.00513