Cluster no. 262

Go back to cluster table

Cluster is part of supercluster: 153

Cluster characteristics:

size 2252
size_real 2252
ecount 43128
supercluster 153
annotations_summary 100.00% organelle/plastid
pair_completeness 0.908474576271186
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00044404973357016
satellite_probability 2.49088588504597e-24
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 2252 1

clusters with similarity:

Cluster Number of similarity hits
131 12
261 4
192 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
261 19 0.184
131 8 0.0257
1 2 0.000575
192 2 0.0122
5 1 0.000635
8 1 0.000628
15 1 0.000425
17 1 0.000175
23 1 0.00043
29 1 0.000555
30 1 0.00028
35 1 0.000313
42 1 0.000556
46 1 0.000636
48 1 0.000312
53 1 0.000351
56 1 0.00363
78 1 0.000401
88 1 0.000434
89 1 0.00075
100 1 0.00103
105 1 0.000681
106 1 0.000705
109 1 0.00137
116 1 0.000485
126 1 0.000861
143 1 0.000821
148 1 0.00093
151 1 0.00108
166 1 0.00139
176 1 0.00187
188 1 0.00625
210 1 0.00493
218 1 0.00388
224 1 0.00722
243 1 0.00156
270 1 0.0107
546 1 0.011
4810 1 0.0165
9800 1 0.0177
16900 1 0.0175
30300 1 0.0179
65900 1 0.0183
68700 1 0.0183
75400 1 0.018
135000 1 0.0182
190000 1 0.0182
301000 1 0.0182
335000 1 0.0182
337000 1 0.0182

CL262 ----> CL261

image

No. of shared pairs: :19