Cluster no. 266

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Cluster is part of supercluster: 157

Cluster characteristics:

size 2227
size_real 2227
ecount 7925
supercluster 157
annotations_summary 2.87% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
1.35% Class_II/Subclass_1/TIR/EnSpm_CACTA:CACTA-TPase
pair_completeness 0.71969111969112
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0157162101481814
satellite_probability 1.11798700625377e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
EnSpm_CACTA CACTA-TPase EnSpm_CACTA CACTA-TPase 30 0.013
Tekay Ty3-INT Tekay Ty3-INT 64 0.029

clusters with similarity:

Cluster Number of similarity hits
48 3
38 1
94 1
166 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
48 12 0.0036
439 11 0.0503
699 11 0.0554
166 10 0.0118
38 9 0.00672
94 9 0.0189
4680 9 0.048
12000 7 0.0377
132 4 0.00439
17 3 0.000515
121 3 0.0044
408 3 0.0111
2160 3 0.0156
3520 3 0.0161
14700 3 0.0162
16500 3 0.0163
23500 3 0.0163
24000 3 0.0163
27500 3 0.0164
79300 3 0.0164
1 2 0.000555
20 2 0.000567
25 2 0.00102
37 2 0.000624
66 2 0.000686
128 2 0.0023
3390 2 0.0108
9690 2 0.0109
42600 2 0.011
115000 2 0.011
119000 2 0.011
141000 2 0.011
222000 2 0.011
299000 2 0.011
319000 2 0.011
342000 2 0.011
8 1 0.000582
12 1 0.000242
13 1 0.000627
15 1 0.000403
16 1 0.000378
19 1 0.000499
21 1 0.000411
24 1 0.000317
46 1 0.000588
50 1 0.000567
85 1 0.00068
93 1 0.00107
98 1 0.000959
116 1 0.000457
125 1 0.0011
130 1 0.000459
135 1 0.00089
138 1 0.00112
149 1 0.00119
156 1 0.000999
161 1 0.000682
163 1 0.000696
172 1 0.000755
180 1 0.00172
181 1 0.00109
212 1 0.00196
213 1 0.000801
222 1 0.00183
265 1 0.00329
294 1 0.00293
311 1 0.0039
313 1 0.00328
462 1 0.00509
668 1 0.00491
712 1 0.00488
2780 1 0.00545
3800 1 0.00536
3850 1 0.00539
4330 1 0.00538
6200 1 0.00543
10500 1 0.00543
12700 1 0.00542
14200 1 0.00543
15500 1 0.00546
24100 1 0.00549
24400 1 0.00549
26300 1 0.00543
27700 1 0.00546
32800 1 0.00545
36600 1 0.00548
71800 1 0.00549
77400 1 0.00549
90400 1 0.00548
120000 1 0.00548
128000 1 0.00548
132000 1 0.00548
215000 1 0.00548
218000 1 0.00548
228000 1 0.00548
239000 1 0.00548
241000 1 0.00548
296000 1 0.00548

CL266 ----> CL48

image

No. of shared pairs: :12

CL266 ----> CL439

image

No. of shared pairs: :11

CL266 ----> CL699

image

No. of shared pairs: :11

CL266 ----> CL166

image

No. of shared pairs: :10