Cluster no. 267

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Cluster is part of supercluster: 158

Cluster characteristics:

size 2215
size_real 2215
ecount 16320
supercluster 158
annotations_summary 4.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness 0.496621621621622
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000451467268623025
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-GAG CRM Ty3-GAG 89 0.04

clusters with similarity:

Cluster Number of similarity hits
87 16
89 10
2 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
87 74 0.045
89 33 0.02
2430 7 0.0183
5880 5 0.0132
11700 5 0.0133
20 4 0.00108
4030 4 0.0105
26 3 0.00126
49 3 0.00149
9950 3 0.00798
61800 3 0.00802
3 2 0.000512
7 2 0.000418
15 2 0.000749
21 2 0.000761
22 2 0.000665
38 2 0.00131
44 2 0.000608
66 2 0.000644
99 2 0.00194
126 2 0.00135
145 2 0.00114
172 2 0.00132
197 2 0.00158
16600 2 0.00533
18900 2 0.00534
21500 2 0.00533
133000 2 0.00535
164000 2 0.00535
178000 2 0.00535
246000 2 0.00535
249000 2 0.00535
258000 2 0.00535
295000 2 0.00535
303000 2 0.00535
317000 2 0.00535
328000 2 0.00535
336000 2 0.00535
2 1 0.000172
5 1 0.000528
6 1 0.000246
8 1 0.000523
9 1 0.000341
11 1 0.000262
13 1 0.00056
16 1 0.000353
17 1 0.000166
18 1 0.000468
19 1 0.000456
24 1 0.000299
30 1 0.000257
34 1 0.000375
40 1 0.00026
45 1 0.000338
48 1 0.000284
54 1 0.000748
56 1 0.00168
64 1 0.000816
73 1 0.00084
74 1 0.000561
80 1 0.000595
81 1 0.000392
82 1 0.000754
83 1 0.000656
86 1 0.000361
101 1 0.00054
103 1 0.000431
104 1 0.00085
106 1 0.000576
120 1 0.000612
123 1 0.000727
130 1 0.000422
134 1 0.000626
135 1 0.000761
138 1 0.00092
140 1 0.000441
153 1 0.000608
167 1 0.000594
179 1 0.00104
191 1 0.000773
194 1 0.00182
210 1 0.00192
251 1 0.00184
260 1 0.00177
273 1 0.00125
276 1 0.00132
307 1 0.00206
367 1 0.0023
438 1 0.00241
947 1 0.00255
1070 1 0.0026
1100 1 0.00259
1990 1 0.00264
3640 1 0.00264
8760 1 0.00266
8910 1 0.00266
12900 1 0.00267
14400 1 0.00266
26200 1 0.00267
37500 1 0.00268
43200 1 0.00268
47400 1 0.00268
47700 1 0.00267
49600 1 0.00267
51300 1 0.00268
52700 1 0.00268
52700 1 0.00268
53400 1 0.00267
61200 1 0.00267
62100 1 0.00267
62100 1 0.00268
62800 1 0.00268
73900 1 0.00267
74000 1 0.00267
75100 1 0.00267
78100 1 0.00267
78800 1 0.00267
82200 1 0.00268
98900 1 0.00268
101000 1 0.00268
106000 1 0.00268
146000 1 0.00268
146000 1 0.00268
149000 1 0.00268
181000 1 0.00268
182000 1 0.00268
220000 1 0.00268
229000 1 0.00268
232000 1 0.00268
241000 1 0.00268
253000 1 0.00268
262000 1 0.00268
265000 1 0.00268
265000 1 0.00268
267000 1 0.00268
276000 1 0.00268
282000 1 0.00268
285000 1 0.00268
287000 1 0.00268
294000 1 0.00268
305000 1 0.00268
306000 1 0.00268
329000 1 0.00268
336000 1 0.00268

CL267 ----> CL87

image

No. of shared pairs: :74

CL267 ----> CL89

image

No. of shared pairs: :33