Cluster no. 268

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Cluster is part of supercluster: 9

Cluster characteristics:

size 2174
size_real 2174
ecount 8797
supercluster 9
annotations_summary 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/Phygy:Ty3-RT
pair_completeness 0.624813153961136
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0574977000919963
satellite_probability 2.27661726897861e-18
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Phygy Ty3-RT Phygy Ty3-RT 1 0.00046

clusters with similarity:

Cluster Number of similarity hits
29 37
98 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
29 227 0.114
586 19 0.0677
193 17 0.0244
1400 15 0.0561
4220 10 0.039
2730 6 0.0234
5680 6 0.0233
13 4 0.0024
52900 3 0.0119
76700 3 0.0119
2 2 0.000351
15 2 0.000785
22 2 0.000693
30 2 0.000531
33 2 0.00132
3610 2 0.00777
3980 2 0.00775
21200 2 0.00789
22700 2 0.00789
23500 2 0.00789
72500 2 0.00792
72500 2 0.00792
116000 2 0.00794
258000 2 0.00794
3 1 0.000264
6 1 0.000253
7 1 0.000214
8 1 0.000559
9 1 0.000356
11 1 0.00027
19 1 0.000483
20 1 0.000278
31 1 0.000194
34 1 0.000393
40 1 0.000269
58 1 0.000948
65 1 0.000667
72 1 0.000675
73 1 0.000936
74 1 0.000602
76 1 0.000643
77 1 0.000679
81 1 0.000411
85 1 0.000649
89 1 0.000654
92 1 0.00118
96 1 0.00082
109 1 0.00108
113 1 0.000664
116 1 0.000443
141 1 0.000681
161 1 0.000651
169 1 0.00104
173 1 0.00137
188 1 0.0028
313 1 0.00267
3100 1 0.00391
3190 1 0.00388
18300 1 0.00395
19000 1 0.00394
19700 1 0.00397
20000 1 0.00395
22700 1 0.00396
24300 1 0.00396
24400 1 0.00396
24800 1 0.00396
24800 1 0.00396
43300 1 0.00395
55700 1 0.00398
140000 1 0.00397
156000 1 0.00397
164000 1 0.00397
167000 1 0.00397
219000 1 0.00397
245000 1 0.00397
309000 1 0.00397

CL268 ----> CL29

image

No. of shared pairs: :227

CL268 ----> CL586

image

No. of shared pairs: :19

CL268 ----> CL193

image

No. of shared pairs: :17

CL268 ----> CL1397

image

No. of shared pairs: :15

CL268 ----> CL4221

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No. of shared pairs: :10