Cluster no. 269

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Cluster is part of supercluster: 114

Cluster characteristics:

size	2056
size_real	2056
ecount	11707
supercluster	114
annotations_summary	15.32% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT 11.82% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT 6.76% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH 5.69% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH 3.89% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT 1.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT 0.44% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT 0.34% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH 0.34% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH 0.19% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH 0.19% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.15% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 0.10% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT 0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RH
pair_completeness	0.773943054357204
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000486381322957198
satellite_probability	4.71413703996316e-23
consensus	None
TAREAN_annotation	Other
orientation_score	1

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Athila Ty3-INT Athila Ty3-INT 9 0.00438

TatII Ty3-INT TatII Ty3-INT 315 0.15321

TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 21 0.01021

TatV Ty3-INT TatV Ty3-INT 4 0.00195

TatII Ty3-PROT TatII Ty3-PROT 80 0.03891

Reina Ty3-RH Reina Ty3-RH 4 0.00195

TatII Ty3-RH TatII Ty3-RH 117 0.05691

TatV Ty3-RH TatV Ty3-RH 1 0.00049

Athila Ty3-RT Athila Ty3-RT 2 0.00097

CRM Ty3-RT CRM Ty3-RT 3 0.00146

TatII Ty3-RT TatII Ty3-RT 243 0.11819

TatV Ty3-RT TatV Ty3-RT 1 0.00049

TatII Ty3-aRH TatII Ty3-aRH 139 0.06761

TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 7 0.00340

TatV Ty3-aRH TatV Ty3-aRH 7 0.00340

clusters with similarity:

Cluster	Number of similarity hits

10	20
202	2
93	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

259	40	0.118
297	20	0.0802
3	3	0.000818
29	3	0.0016
130	3	0.00141
63	2	0.000658
8160	2	0.0149
19700	2	0.015
54800	2	0.0151
181000	2	0.0152
252000	2	0.0152
314000	2	0.0152
6	1	0.000261
10	1	0.000686
13	1	0.000648
14	1	0.000295
15	1	0.000412
16	1	0.000386
18	1	0.000528
19	1	0.000512
26	1	0.000468
30	1	0.000274
36	1	0.000615
50	1	0.000584
53	1	0.000342
54	1	0.000913
59	1	0.000843
60	1	0.000859
67	1	0.000451
76	1	0.000697
80	1	0.000695
93	1	0.00114
119	1	0.00152
122	1	0.000759
126	1	0.000807
127	1	0.000772
142	1	0.00107
144	1	0.0016
147	1	0.00037
153	1	0.000713
166	1	0.00126
172	1	0.000785
177	1	0.00178
212	1	0.00218
464	1	0.00583
14200	1	0.00749
26100	1	0.00749
28900	1	0.00755
66700	1	0.0076
67500	1	0.00755
68000	1	0.0076
218000	1	0.00758
3e+05	1	0.00758
309000	1	0.00758
332000	1	0.00758

CL269 ----> CL259

No. of shared pairs: :40

CL269 ----> CL297

No. of shared pairs: :20