Cluster no. 271

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Cluster is part of supercluster: 161

Cluster characteristics:

size 1945
size_real 1945
ecount 21431
supercluster 161
annotations_summary 13.26% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
11.47% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
8.74% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
4.73% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
3.19% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
1.49% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
1.39% Class_I/LTR/Ty1_copia/TAR:Ty1-RT
1.29% organelle/mitochondria
0.31% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
0.26% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.21% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.15% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
0.10% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.10% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.05% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.814365671641791
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00051413881748072
satellite_probability 2.15940292115794e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 25 0.01285
Ivana Ty1-GAG Ivana Ty1-GAG 92 0.04730
Ivana Ty1-INT Ivana Ty1-INT 258 0.13265
Tork Ty1-INT Tork Ty1-INT 1 0.00051
Ivana Ty1-PROT Ivana Ty1-PROT 62 0.03188
Ale Ty1-RH Ale Ty1-RH 2 0.00103
Ivana Ty1-RH Ivana Ty1-RH 170 0.08740
Ale Ty1-RT Ale Ty1-RT 29 0.01491
Angela Ty1-RT Angela Ty1-RT 1 0.00051
Bryco Ty1-RT Bryco Ty1-RT 4 0.00206
Gymco-I Ty1-RT Gymco-I Ty1-RT 3 0.00154
Gymco-II Ty1-RT Gymco-II Ty1-RT 6 0.00308
Ikeros Ty1-RT Ikeros Ty1-RT 5 0.00257
Ivana Ty1-RT Ivana Ty1-RT 223 0.11465
SIRE Ty1-RT SIRE Ty1-RT 1 0.00051
TAR Ty1-RT TAR Ty1-RT 27 0.01388
Tork Ty1-RT Tork Ty1-RT 2 0.00103

clusters with similarity:

Cluster Number of similarity hits
226 3
25 2
161 1
231 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2 4 0.000721
68 3 0.002
137 3 0.00295
25 2 0.00107
51 2 0.000693
122 2 0.00156
199 2 0.0055
212 2 0.00468
226 2 0.00657
98600 2 0.0199
182000 2 0.0199
3 1 0.000275
5 1 0.000617
7 1 0.000222
9 1 0.000376
19 1 0.000521
30 1 0.000276
48 1 0.000308
61 1 0.000595
72 1 0.000752
81 1 0.000438
107 1 0.00128
108 1 0.00113
119 1 0.00159
129 1 0.00148
132 1 0.0012
134 1 0.000755
141 1 0.00076
143 1 0.000791
147 1 0.000374
151 1 0.00103
161 1 0.000722
162 1 8e-04
175 1 0.00149
176 1 0.00173
186 1 0.000741
204 1 0.00246
213 1 0.000857
214 1 0.00244
232 1 0.00205
242 1 0.0018
249 1 0.00292
1780 1 0.00862
1790 1 0.00935
2780 1 0.0093
6510 1 0.00976
24900 1 0.0098
30500 1 0.00995
68100 1 0.0099
72500 1 0.01
93900 1 0.00995
166000 1 0.00995
285000 1 0.00995
346000 1 0.00995