Cluster no. 272

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Cluster is part of supercluster: 162

Cluster characteristics:

size 1937
size_real 1937
ecount 14543
supercluster 162
annotations_summary
pair_completeness 0.455296769346356
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00154878678368611
satellite_probability 3.90603663686178e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
3 269
6 147

clusters connected through mates:

Cluster Number of shared
read pairs
k
6 247 0.0609
3 237 0.0608
495 3 0.0073
14 2 0.000552
84 2 0.00107
222 2 0.00275
583 2 0.00498
128000 2 0.0055
201000 2 0.0055
2 1 0.000172
4 1 0.000271
5 1 0.000531
8 1 0.000526
9 1 0.000342
17 1 0.000166
21 1 0.000382
23 1 0.00038
25 1 0.000469
30 1 0.000258
31 1 0.00019
33 1 0.000613
36 1 0.000538
50 1 0.000515
62 1 0.000337
63 1 0.000306
76 1 6e-04
79 1 0.00037
81 1 0.000393
82 1 0.00076
95 1 0.000776
96 1 0.000751
107 1 0.000956
117 1 0.000663
120 1 0.000616
123 1 0.000733
126 1 0.00068
130 1 0.000424
136 1 0.00107
144 1 0.00117
146 1 0.000925
147 1 0.000341
149 1 0.000976
210 1 0.00196
226 1 0.00176
232 1 0.00133
239 1 0.0015
253 1 0.00136
560 1 0.00252
798 1 0.00266
2420 1 0.00269
4300 1 0.00272
19300 1 0.00274
23800 1 0.00274
28300 1 0.00274
46400 1 0.00275
54400 1 0.00275
64300 1 0.00275
103000 1 0.00275
114000 1 0.00275
306000 1 0.00275
308000 1 0.00275
322000 1 0.00275
323000 1 0.00275

CL272 ----> CL6

image

No. of shared pairs: :247

CL272 ----> CL3

image

No. of shared pairs: :237