Cluster no. 273

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Cluster is part of supercluster: 163

Cluster characteristics:

size 1923
size_real 1923
ecount 26210
supercluster 163
annotations_summary 0.16% Class_II/Subclass_2/Helitron:Helitron-HEL2
pair_completeness 0.383453237410072
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0015600624024961
satellite_probability 7.55887620545779e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Helitron Helitron-HEL2 Helitron Helitron-HEL2 3 0.0016

clusters with similarity:

Cluster Number of similarity hits
123 1
170 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
123 30 0.021
317 16 0.0336
4180 8 0.0184
170 4 0.0027
213 4 0.00267
5660 4 0.00925
8220 4 0.00927
6 3 0.000728
177 3 0.00349
243 3 0.00295
318 3 0.00489
467 3 0.00613
2540 3 0.00694
15900 3 0.00696
26600 3 0.00696
38000 3 0.00697
41700 3 0.00697
45500 3 0.00698
17 2 0.000329
92 2 0.00195
98 2 0.00155
128 2 0.00179
205 2 0.0019
4570 2 0.0046
15300 2 0.00463
50500 2 0.00465
75900 2 0.00465
140000 2 0.00466
143000 2 0.00466
171000 2 0.00466
255000 2 0.00466
278000 2 0.00466
287000 2 0.00466
308000 2 0.00466
343000 2 0.00466
344000 2 0.00466
5 1 0.000513
9 1 0.000335
14 1 0.000271
22 1 0.000326
23 1 0.00037
37 1 0.00029
39 1 0.000548
40 1 0.000257
42 1 0.000461
45 1 0.000332
55 1 0.000246
63 1 3e-04
64 1 0.00078
67 1 0.000397
74 1 0.000544
84 1 0.000516
89 1 0.000586
91 1 0.000925
93 1 0.000849
96 1 0.000716
99 1 0.00092
105 1 0.000542
111 1 0.000343
129 1 0.000994
130 1 0.000413
152 1 0.000468
162 1 0.000634
163 1 0.000594
164 1 0.00156
174 1 0.000678
181 1 0.000861
183 1 0.000843
186 1 0.000596
187 1 0.000956
189 1 0.000728
195 1 0.00127
196 1 0.000683
215 1 0.00122
223 1 0.00132
248 1 0.00157
267 1 0.00125
328 1 0.00185
503 1 0.0022
509 1 0.00214
1100 1 0.00226
1430 1 0.00228
4310 1 0.0023
4870 1 0.0023
10100 1 0.00232
10100 1 0.00232
10300 1 0.00232
10900 1 0.00232
12400 1 0.00232
12700 1 0.00232
13900 1 0.00233
14200 1 0.00233
15600 1 0.00232
19900 1 0.00232
20300 1 0.00233
24400 1 0.00233
29300 1 0.00232
31200 1 0.00232
33100 1 0.00232
44100 1 0.00232
45600 1 0.00233
46200 1 0.00233
46600 1 0.00233
50400 1 0.00233
52300 1 0.00233
55600 1 0.00233
66000 1 0.00233
75100 1 0.00233
78500 1 0.00233
79100 1 0.00233
81200 1 0.00233
82900 1 0.00233
92800 1 0.00233
96000 1 0.00233
96800 1 0.00233
107000 1 0.00233
118000 1 0.00233
139000 1 0.00233
146000 1 0.00233
177000 1 0.00233
184000 1 0.00233
197000 1 0.00233
202000 1 0.00233
207000 1 0.00233
216000 1 0.00233
254000 1 0.00233
255000 1 0.00233
257000 1 0.00233
258000 1 0.00233
3e+05 1 0.00233
302000 1 0.00233
331000 1 0.00233
333000 1 0.00233

CL273 ----> CL123

image

No. of shared pairs: :30

CL273 ----> CL317

image

No. of shared pairs: :16