Cluster no. 274

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Cluster is part of supercluster: 164

Cluster characteristics:

size 1892
size_real 1892
ecount 22434
supercluster 164
annotations_summary 1.00% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.844054580896686
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.516384778012685
satellite_probability 3.06134443320035e-05
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-RT Ale Ty1-RT 1 0.00053
Ivana Ty1-RT Ivana Ty1-RT 19 0.01004

clusters with similarity:

Cluster Number of similarity hits
120 10

clusters connected through mates:

Cluster Number of shared
read pairs
k
120 26 0.0194
170 7 0.00619
17 3 0.000524
22900 3 0.0364
4 2 0.000587
18 2 0.00109
22 2 0.000736
33 2 0.00148
48 2 0.00062
529 2 0.0161
23700 2 0.0245
26900 2 0.0242
38000 2 0.0244
39800 2 0.0247
5 1 0.000625
6 1 0.000265
12 1 0.000248
15 1 0.000421
24 1 0.000327
38 1 0.000807
40 1 0.000282
49 1 0.000582
72 1 0.000763
74 1 0.000672
95 1 0.000994
98 1 0.00106
100 1 0.00101
102 1 0.000423
109 1 0.00132
114 1 0.00143
116 1 0.000479
121 1 0.00172
128 1 0.0013
130 1 0.000482
136 1 0.00153
189 1 0.000975
190 1 0.00121
275 1 0.00699
276 1 0.00215
467 1 0.00712
553 1 0.0102
818 1 0.00971
2000 1 0.0115
19600 1 0.012
25100 1 0.0121
71900 1 0.0124
72600 1 0.0123
76400 1 0.0124
77300 1 0.0123
158000 1 0.0123
262000 1 0.0123
271000 1 0.0123
296000 1 0.0123

CL274 ----> CL120

image

No. of shared pairs: :26