Cluster no. 275

Go back to cluster table

Cluster is part of supercluster: 165

Cluster characteristics:

size 1862
size_real 1862
ecount 25755
supercluster 165
annotations_summary 98.82% organelle/plastid
1.13% organelle/mitochondria
pair_completeness 0.873239436619718
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000537056928034372
satellite_probability 6.1246173690846e-24
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 21 0.011
plastid plastid 1840 0.988

clusters with similarity:

Cluster Number of similarity hits
131 5
270 5

clusters connected through mates:

Cluster Number of shared
read pairs
k
270 16 0.156
131 14 0.0437
9990 3 0.0465
6 2 0.000532
46 2 0.00127
191 2 0.00203
192 2 0.0115
330 2 0.0201
46000 2 0.031
254000 2 0.0312
3 1 0.000278
8 1 0.000625
10 1 0.000719
14 1 0.000301
23 1 0.000428
26 1 0.000484
27 1 0.000747
30 1 0.000279
39 1 0.000686
52 1 0.000543
64 1 0.00109
72 1 0.000773
90 1 0.000416
92 1 0.00152
100 1 0.00102
107 1 0.00134
114 1 0.00147
138 1 0.00129
143 1 0.000815
145 1 0.000693
147 1 0.000379
154 1 0.00167
155 1 0.00128
175 1 0.00157
185 1 0.00119
201 1 0.0061
217 1 0.00176
224 1 0.00678
246 1 0.00697
253 1 0.00229
259 1 0.0037
274 1 0.00699
277 1 0.00518
601 1 0.0103
908 1 0.0141
5020 1 0.0155
20000 1 0.0154
25600 1 0.0155
27500 1 0.0155
45600 1 0.0155
74800 1 0.0155
78800 1 0.0155
206000 1 0.0156
228000 1 0.0156
228000 1 0.0156
344000 1 0.0156

CL275 ----> CL270

image

No. of shared pairs: :16

CL275 ----> CL131

image

No. of shared pairs: :14