Cluster no. 276

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Cluster is part of supercluster: 166

Cluster characteristics:

size 1851
size_real 1851
ecount 61245
supercluster 166
annotations_summary 0.11% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.412977099236641
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00540248514316586
satellite_probability 1.06251818752296e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 1 0.00054
CRM Ty3-RT CRM Ty3-RT 2 0.00108

clusters with similarity:

Cluster Number of similarity hits
26 1
44 1
122 1
139 1
156 1
181 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
122 13 0.00828
2830 8 0.0204
20 6 0.00161
47 6 0.00215
126 4 0.00268
162 4 0.00261
177 4 0.0049
1120 4 0.0102
7 3 0.000625
11 3 0.000783
17 3 0.000498
30 3 0.000769
44 3 0.000909
76 3 0.00178
90 3 0.0011
99 3 0.00288
123 3 0.00216
148 3 0.00213
167 3 0.00177
1140 3 0.00756
4 2 0.000538
6 2 0.00049
8 2 0.00104
9 2 0.000679
15 2 0.000746
24 2 0.000595
26 2 0.000838
31 2 0.000379
34 2 0.000747
40 2 0.000519
48 2 0.000566
50 2 0.00102
68 2 0.00112
85 2 0.00119
89 2 0.0012
139 2 0.00137
145 2 0.00113
153 2 0.00121
161 2 0.0012
172 2 0.00131
189 2 0.0015
58200 2 0.00518
111000 2 0.00519
211000 2 0.00519
334000 2 0.00519
341000 2 0.00519
1 1 0.000263
2 1 0.000171
3 1 0.000255
22 1 0.000331
23 1 0.000377
25 1 0.000464
27 1 0.000603
28 1 0.000567
29 1 0.000469
33 1 0.000605
37 1 0.000294
45 1 0.000337
54 1 0.000742
61 1 0.000509
62 1 0.000335
63 1 0.000304
66 1 0.000321
81 1 0.00039
83 1 0.000651
86 1 0.00036
92 1 0.00102
96 1 0.000739
102 1 0.000375
113 1 0.00061
118 1 0.000858
120 1 0.000608
130 1 0.00042
132 1 0.000897
133 1 0.000325
134 1 0.000622
137 1 0.000768
140 1 0.000438
143 1 0.000646
144 1 0.00114
150 1 0.000746
156 1 0.00083
158 1 0.000758
163 1 0.00061
182 1 0.000866
186 1 0.000612
187 1 0.000998
196 1 0.000704
198 1 0.00127
200 1 0.000825
223 1 0.00141
229 1 0.00101
231 1 0.00176
245 1 0.00102
267 1 0.00132
274 1 0.00215
301 1 0.00204
323 1 0.00221
326 1 0.00201
330 1 0.00238
338 1 0.0024
339 1 0.00215
397 1 0.00223
402 1 0.00242
468 1 0.00247
554 1 0.00239
622 1 0.00241
895 1 0.00249
923 1 0.00247
1650 1 0.00254
2290 1 0.00253
3040 1 0.00256
3600 1 0.00254
3780 1 0.00254
4030 1 0.00256
4070 1 0.00258
7480 1 0.00257
11400 1 0.00258
12500 1 0.00259
22000 1 0.00259
22700 1 0.00259
37900 1 0.00259
38000 1 0.00259
38700 1 0.00259
55000 1 0.0026
57100 1 0.00259
57600 1 0.00259
58400 1 0.0026
60300 1 0.0026
67600 1 0.0026
68300 1 0.0026
73000 1 0.0026
76100 1 0.00259
77200 1 0.0026
80400 1 0.00259
82300 1 0.0026
83800 1 0.0026
87900 1 0.00259
96000 1 0.00259
119000 1 0.00259
121000 1 0.00259
133000 1 0.00259
137000 1 0.00259
164000 1 0.00259
165000 1 0.00259
166000 1 0.00259
180000 1 0.00259
225000 1 0.00259
225000 1 0.00259
242000 1 0.00259
251000 1 0.00259
266000 1 0.00259
272000 1 0.00259
289000 1 0.00259
318000 1 0.00259
321000 1 0.00259

CL276 ----> CL122

image

No. of shared pairs: :13