Cluster no. 279

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Cluster is part of supercluster: 169

Cluster characteristics:

size 1712
size_real 1712
ecount 9506
supercluster 169
annotations_summary 11.80% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-aRH
0.58% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.18% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
pair_completeness 0.567765567765568
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00058411214953271
satellite_probability 1.13992396794032e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-INT TatIII Ty3-INT 3 0.0018
TatIII Ty3-aRH TatIII Ty3-aRH 202 0.1180
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 10 0.0058

clusters with similarity:

Cluster Number of similarity hits
187 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
187 43 0.0504
380 32 0.0976
15000 5 0.0209
2670 4 0.0164
4 3 0.000841
139 3 0.00229
4200 3 0.0125
11400 3 0.0126
17600 3 0.0126
32900 3 0.0126
15 2 0.00079
17 2 0.00034
29 2 0.00101
63 2 0.000636
211 2 0.00271
284 2 0.00487
1810 2 0.00803
9660 2 0.00839
73100 2 0.00842
106000 2 0.00844
139000 2 0.00844
255000 2 0.00844
3 1 0.000265
7 1 0.000215
9 1 0.000358
12 1 0.000238
19 1 0.000486
27 1 0.000662
31 1 0.000195
33 1 0.000665
34 1 0.000395
35 1 0.000296
36 1 0.000577
40 1 0.00027
45 1 0.000355
47 1 0.000378
48 1 0.000296
49 1 0.000533
51 1 0.000331
72 1 0.000682
74 1 0.000608
89 1 0.00066
92 1 0.0012
101 1 0.000583
102 1 0.000397
109 1 0.0011
134 1 0.000685
144 1 0.00137
153 1 0.000664
156 1 0.000947
191 1 0.000865
244 1 0.00292
330 1 0.00367
349 1 0.00309
1570 1 0.00402
3550 1 0.00418
5260 1 0.00417
10700 1 0.00416
13000 1 0.00422
16800 1 0.0042
18000 1 0.00422
25800 1 0.00421
35700 1 0.0042
36200 1 0.00422
41200 1 0.00422
41500 1 0.00422
50200 1 0.00423
66300 1 0.00423
68200 1 0.00423
72200 1 0.00421
92600 1 0.00422
102000 1 0.00422
118000 1 0.00422
123000 1 0.00422
149000 1 0.00422
165000 1 0.00422
174000 1 0.00422
180000 1 0.00422
220000 1 0.00422
297000 1 0.00422
308000 1 0.00422
344000 1 0.00422

CL279 ----> CL187

image

No. of shared pairs: :43

CL279 ----> CL380

image

No. of shared pairs: :32