Cluster no. 280

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Cluster is part of supercluster: 168

Cluster characteristics:

size 1665
size_real 1665
ecount 5938
supercluster 168
annotations_summary
pair_completeness 0.632352941176471
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000600600600600601
satellite_probability 4.97759293480724e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs
k
688 27 0.121
2190 10 0.0506
5980 8 0.0417
7600 6 0.0312
5680 5 0.026
2940 4 0.0205
970 3 0.0147
6840 3 0.0157
12100 3 0.0157
19300 3 0.0157
33600 3 0.0158
63100 3 0.0159
70400 3 0.0159
2 2 0.000355
6 2 0.000515
9 2 0.000728
23 2 0.000813
97 2 0.00117
9240 2 0.0105
9520 2 0.0104
14000 2 0.0105
19400 2 0.0105
23200 2 0.0106
25900 2 0.0105
40500 2 0.0106
48300 2 0.0106
52600 2 0.0106
65300 2 0.0106
102000 2 0.0106
190000 2 0.0106
196000 2 0.0106
247000 2 0.0106
258000 2 0.0106
308000 2 0.0106
316000 2 0.0106
327000 2 0.0106
346000 2 0.0106
3 1 0.000269
7 1 0.000217
11 1 0.000275
21 1 0.00041
27 1 0.000684
29 1 0.000517
39 1 0.000632
48 1 3e-04
55 1 0.000261
70 1 0.000981
74 1 0.000626
75 1 0.000323
86 1 0.000387
89 1 0.000682
91 1 0.00119
92 1 0.00128
94 1 0.00208
98 1 0.000953
99 1 0.00118
105 1 0.000624
140 1 0.00048
170 1 0.000807
176 1 0.0015
213 1 0.000797
218 1 0.00255
305 1 0.00436
346 1 0.00375
1800 1 0.0051
4720 1 0.00519
5300 1 0.00522
8100 1 0.00525
9300 1 0.00526
9330 1 0.00529
9400 1 0.00529
11800 1 0.00531
16300 1 0.00528
16900 1 0.00531
19200 1 0.00528
20300 1 0.00528
20500 1 0.00528
26600 1 0.00529
33900 1 0.00531
34000 1 0.00531
34400 1 0.00531
34600 1 0.00531
35700 1 0.00528
36500 1 0.00531
56900 1 0.00529
57400 1 0.00529
59100 1 0.00529
60700 1 0.00532
63600 1 0.00532
66300 1 0.00532
67900 1 0.00529
71200 1 0.00532
72600 1 0.00532
75800 1 0.00529
76100 1 0.00532
78400 1 0.00529
80000 1 0.00532
83400 1 0.00529
90300 1 0.00531
101000 1 0.00531
122000 1 0.00531
125000 1 0.00531
134000 1 0.00531
144000 1 0.00531
149000 1 0.00531
159000 1 0.00531
183000 1 0.00531
184000 1 0.00531
185000 1 0.00531
188000 1 0.00531
199000 1 0.00531
234000 1 0.00531
236000 1 0.00531
238000 1 0.00531
250000 1 0.00531
251000 1 0.00531
253000 1 0.00531
260000 1 0.00531
279000 1 0.00531
283000 1 0.00531
286000 1 0.00531
288000 1 0.00531
304000 1 0.00531
331000 1 0.00531
340000 1 0.00531
345000 1 0.00531

CL280 ----> CL688

image

No. of shared pairs: :27

CL280 ----> CL2186

image

No. of shared pairs: :10