Cluster no. 281

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Cluster is part of supercluster: 171

Cluster characteristics:

size 1637
size_real 1637
ecount 36026
supercluster 171
annotations_summary 0.98% Class_I/LINE:LINE-ENDO
pair_completeness 0.822939866369711
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00183262064752596
satellite_probability 1.76339170420733e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-ENDO LINE LINE-ENDO 16 0.0098

clusters with similarity:

Cluster Number of similarity hits
2 111
230 1
234 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2 45 0.00814
234 14 0.0585
230 5 0.0213
213 4 0.00349
1240 3 0.0341
4 2 0.000587
12 2 0.000495
18 2 0.00109
31 2 0.000402
98 2 0.00213
126 2 0.00168
175000 2 0.0248
1 1 0.000285
6 1 0.000265
11 1 0.000283
17 1 0.000175
19 1 0.000526
30 1 0.000278
38 1 0.000808
49 1 0.000582
66 1 0.000356
86 1 0.000404
109 1 0.00132
112 1 0.00138
114 1 0.00143
130 1 0.000482
159 1 0.00116
187 1 0.00143
191 1 0.001
235 1 0.00141
252 1 0.00287
4850 1 0.0119
8800 1 0.012
16300 1 0.0121
41200 1 0.0123
50400 1 0.0125
62300 1 0.0123
233000 1 0.0124
291000 1 0.0124

CL281 ----> CL2

image

No. of shared pairs: :45

CL281 ----> CL234

image

No. of shared pairs: :14