Cluster no. 283

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Cluster is part of supercluster: 173

Cluster characteristics:

size 1445
size_real 1445
ecount 9901
supercluster 173
annotations_summary 24.64% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-INT
17.85% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
12.66% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
4.57% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-PROT
4.50% organelle/mitochondria
2.56% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-CHDII
0.14% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.07% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.07% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
pair_completeness 0.732613908872902
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00207612456747405
satellite_probability 9.81425038973844e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 65 0.04498
Galadriel Ty3-CHDII Galadriel Ty3-CHDII 37 0.02561
Galadriel Ty3-INT Galadriel Ty3-INT 356 0.24637
Reina Ty3-INT Reina Ty3-INT 2 0.00138
Galadriel Ty3-PROT Galadriel Ty3-PROT 66 0.04567
Athila Ty3-RH Athila Ty3-RH 1 0.00069
Galadriel Ty3-RH Galadriel Ty3-RH 183 0.12664
Reina Ty3-RH Reina Ty3-RH 1 0.00069
Galadriel Ty3-RT Galadriel Ty3-RT 258 0.17855

clusters with similarity:

Cluster Number of similarity hits
23 1
217 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
217 10 0.0162
184 7 0.0137
2970 3 0.0252
33 2 0.00145
72 2 0.00149
74 2 0.00132
102 2 0.000835
139 2 0.00169
48700 2 0.0177
2 1 0.00018
3 1 0.000274
20 1 0.000289
23 1 0.00042
31 1 2e-04
35 1 0.000308
40 1 0.000279
42 1 0.000539
66 1 0.000352
98 1 0.00103
121 1 0.00164
134 1 0.000749
138 1 0.00121
143 1 0.000784
156 1 0.00107
163 1 0.000732
169 1 0.00121
182 1 0.00113
238 1 0.00255
258 1 0.00158
290 1 0.00568
296 1 0.00601
465 1 0.00604
7380 1 0.00855
8770 1 0.00889
11100 1 0.00889
14300 1 0.0087
18900 1 0.00881
35300 1 0.00881
35300 1 0.00889
36800 1 0.00881
39600 1 0.00889
51200 1 0.00885
68500 1 0.00885
71700 1 0.00885
79900 1 0.00893
82200 1 0.00885
84900 1 0.00893
139000 1 0.00889
153000 1 0.00889
156000 1 0.00889
173000 1 0.00889
197000 1 0.00889
205000 1 0.00889
206000 1 0.00889
226000 1 0.00889
239000 1 0.00889
247000 1 0.00889
279000 1 0.00889
293000 1 0.00889
309000 1 0.00889
317000 1 0.00889
318000 1 0.00889
320000 1 0.00889
348000 1 0.00889

CL283 ----> CL217

image

No. of shared pairs: :10