Cluster no. 284

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Cluster is part of supercluster: 160

Cluster characteristics:

size 1411
size_real 1411
ecount 5448
supercluster 160
annotations_summary 15.66% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-GAG
pair_completeness 0.603409090909091
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00070871722182849
satellite_probability 7.63705200701412e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-GAG TatIII Ty3-GAG 221 0.16

clusters connected through mates:

Cluster Number of shared
read pairs		 k
336 32 0.118
187 11 0.0139
6550 4 0.0223
17 3 0.000516
1260 3 0.0157
27600 3 0.0169
3 2 0.000539
22 2 0.000711
279 2 0.00487
64300 2 0.0114
74800 2 0.0114
244000 2 0.0114
273000 2 0.0114
345000 2 0.0114
4 1 0.000285
7 1 0.000218
12 1 0.000242
14 1 0.000291
31 1 0.000197
41 1 0.000327
48 1 0.000301
61 1 0.000569
67 1 0.000442
78 1 0.000382
86 1 0.000389
96 1 0.000875
102 1 0.000407
114 1 0.00126
120 1 0.000697
130 1 0.000461
203 1 0.0014
245 1 0.0013
943 1 0.00518
1490 1 0.00543
43700 1 0.0057
44500 1 0.00567
57800 1 0.00568
62900 1 0.00571
73000 1 0.00571
76100 1 0.00568
77900 1 0.00568
90500 1 0.0057
110000 1 0.0057
126000 1 0.0057
136000 1 0.0057
167000 1 0.0057
179000 1 0.0057
187000 1 0.0057
213000 1 0.0057
258000 1 0.0057

CL284 ----> CL336

image

No. of shared pairs: :32

CL284 ----> CL187

image

No. of shared pairs: :11