Cluster no. 288

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Cluster is part of supercluster: 177

Cluster characteristics:

size 1297
size_real 1297
ecount 4987
supercluster 177
annotations_summary 4.55% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-CHDII
0.69% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-CHDII
pair_completeness 0.452407614781635
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000771010023130301
satellite_probability 4.28848727092841e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-CHDII Reina Ty3-CHDII 9 0.0069
chromo-unclass Ty3-CHDII chromo-unclass Ty3-CHDII 59 0.0455

clusters with similarity:

Cluster Number of similarity hits
14 1
30 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
389 15 0.0472
452 11 0.0393
2 8 0.0014
78 8 0.00298
5640 6 0.0239
1260 5 0.0195
4160 5 0.0199
30 4 0.00106
470 4 0.0136
2000 4 0.0158
51 3 0.00099
68 3 0.00182
173 3 0.00414
200 3 0.0028
5530 3 0.012
26600 3 0.0121
27500 3 0.0122
49800 3 0.0122
4 2 0.00056
81 2 0.000824
89 2 0.00131
127 2 0.00142
143 2 0.00142
570 2 0.00709
1210 2 0.00756
12200 2 0.00808
15400 2 0.00813
15500 2 0.00806
32300 2 0.00811
46300 2 0.00813
50300 2 0.00813
60700 2 0.00813
180000 2 0.00815
272000 2 0.00815
278000 2 0.00815
284000 2 0.00815
289000 2 0.00815
3 1 0.000265
6 1 0.000254
11 1 0.000271
14 1 0.000285
16 1 0.000369
17 1 0.00017
20 1 0.000279
25 1 0.000496
28 1 0.000616
39 1 0.00061
41 1 0.00032
47 1 0.000376
59 1 0.000769
73 1 0.000942
74 1 0.000605
80 1 0.000644
100 1 0.000864
110 1 0.000915
114 1 0.00116
120 1 0.000664
130 1 0.000446
132 1 0.00103
134 1 0.000681
158 1 0.000848
165 1 0.000713
167 1 0.000643
178 1 0.00142
182 1 0.000986
186 1 0.000669
212 1 0.00175
213 1 0.000762
242 1 0.00142
255 1 0.00147
295 1 0.00244
427 1 0.00356
2340 1 0.00399
3350 1 0.00398
3840 1 0.00402
4220 1 0.00402
4340 1 0.00403
5480 1 0.00401
8830 1 0.00401
9040 1 0.00406
10800 1 0.00405
10900 1 0.00404
11600 1 0.00404
12900 1 0.00404
13800 1 0.00405
13900 1 0.00405
16100 1 0.00405
18900 1 0.00407
19900 1 0.00404
22900 1 0.00405
28200 1 0.00407
28600 1 0.00405
29000 1 0.00408
42200 1 0.00407
46700 1 0.00407
50700 1 0.00408
52800 1 0.00408
63000 1 0.00408
64600 1 0.00407
69700 1 0.00408
69800 1 0.00407
70200 1 0.00407
73400 1 0.00407
89000 1 0.00407
97300 1 0.00407
108000 1 0.00407
117000 1 0.00407
122000 1 0.00407
133000 1 0.00407
156000 1 0.00407
159000 1 0.00407
178000 1 0.00407
180000 1 0.00407
202000 1 0.00407
206000 1 0.00407
221000 1 0.00407
231000 1 0.00407
241000 1 0.00407
253000 1 0.00407
291000 1 0.00407
313000 1 0.00407
320000 1 0.00407
334000 1 0.00407
335000 1 0.00407
344000 1 0.00407

CL288 ----> CL389

image

No. of shared pairs: :15

CL288 ----> CL452

image

No. of shared pairs: :11