Cluster no. 289

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Cluster is part of supercluster: 178

Cluster characteristics:

size 1288
size_real 1288
ecount 6661
supercluster 178
annotations_summary 0.08% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.733512786002692
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00077639751552795
satellite_probability 9.81425038973844e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-RT Tekay Ty3-RT 1 0.00078

clusters connected through mates:

Cluster Number of shared
read pairs
k
441 6 0.0494
5480 6 0.0571
152 5 0.00277
62900 3 0.0299
2 2 0.00036
4 2 0.000583
17 2 0.000348
39 2 0.00134
54 2 0.00188
206 2 0.00366
456 2 0.0156
68200 2 0.0199
133000 2 0.02
288000 2 0.02
13 1 0.000662
19 1 0.000521
21 1 0.000425
22 1 0.000366
27 1 0.000728
28 1 0.000677
32 1 0.000656
34 1 0.000418
35 1 0.000309
38 1 0.000795
43 1 0.000382
46 1 0.000618
51 1 0.000347
61 1 0.000595
64 1 0.00105
71 1 0.000436
81 1 0.000439
84 1 0.000622
97 1 0.000618
104 1 0.00111
119 1 0.00159
126 1 0.000829
154 1 0.00158
233 1 0.00396
263 1 0.00171
2640 1 0.00939
3470 1 0.0099
5610 1 0.0098
12900 1 0.01
24000 1 0.00995
24400 1 0.00995
47300 1 0.00995
53800 1 0.0101
55800 1 0.00995
58700 1 0.0101
72100 1 0.00995
81700 1 0.0101
82400 1 0.00995
84100 1 0.0101
154000 1 0.01
157000 1 0.01
181000 1 0.01
192000 1 0.01
202000 1 0.01
205000 1 0.01
216000 1 0.01
252000 1 0.01
273000 1 0.01
288000 1 0.01