Cluster no. 291

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Cluster is part of supercluster: 180

Cluster characteristics:

size 1204
size_real 1204
ecount 8720
supercluster 180
annotations_summary
pair_completeness 0.541613316261204
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.134551495016611
satellite_probability 7.40724439817254e-15
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
162 6
38 2

clusters connected through mates:

Cluster Number of shared
read pairs
k
162 25 0.0188
1030 11 0.0576
1660 7 0.0369
195 6 0.0111
561 6 0.0308
7 4 0.000871
12 3 0.000725
38 3 0.00224
3620 3 0.0162
6380 3 0.0164
6780 3 0.0165
77000 3 0.0166
4 2 0.00057
6 2 0.000516
37 2 0.000625
43 2 0.000741
120 2 0.00139
130 2 0.00092
636 2 0.00973
6460 2 0.0109
24800 2 0.011
28900 2 0.0111
30800 2 0.011
32100 2 0.011
42900 2 0.011
61100 2 0.0111
249000 2 0.0111
291000 2 0.0111
295000 2 0.0111
1 1 0.000278
2 1 0.000178
3 1 0.000269
14 1 0.000291
20 1 0.000284
24 1 0.000317
28 1 0.000642
36 1 0.000597
45 1 0.000362
54 1 0.000875
61 1 0.000568
63 1 0.000324
64 1 0.000969
74 1 0.00063
76 1 0.000674
81 1 0.000424
85 1 0.000681
126 1 0.000777
128 1 0.00115
134 1 0.000713
137 1 0.000912
150 1 0.000881
156 1 0.001
159 1 0.00104
165 1 0.000748
167 1 0.000671
178 1 0.00157
181 1 0.0011
205 1 0.00125
222 1 0.00184
238 1 0.00217
253 1 0.00181
346 1 0.00388
380 1 0.00369
491 1 0.00422
496 1 0.00465
631 1 0.00498
1440 1 0.00521
1510 1 0.00522
1820 1 0.00535
2510 1 0.00538
2770 1 0.00529
3070 1 0.00543
3120 1 0.00538
4000 1 0.00535
6080 1 0.00554
6140 1 0.00545
6790 1 0.00541
9920 1 0.00548
12500 1 0.00556
14200 1 0.00551
15400 1 0.00548
17400 1 0.00549
18500 1 0.00552
20700 1 0.00552
20900 1 0.00552
22000 1 0.00551
28600 1 0.00554
35300 1 0.00556
35400 1 0.00552
37600 1 0.00556
37800 1 0.00552
39700 1 0.00552
43900 1 0.00552
54700 1 0.00557
66300 1 0.00557
87000 1 0.00556
118000 1 0.00556
135000 1 0.00556
186000 1 0.00556
190000 1 0.00556
230000 1 0.00556
236000 1 0.00556
245000 1 0.00556
279000 1 0.00556
340000 1 0.00556

CL291 ----> CL162

image

No. of shared pairs: :25

CL291 ----> CL1030

image

No. of shared pairs: :11