Cluster no. 292

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Cluster is part of supercluster: 181

Cluster characteristics:

size 1195
size_real 1195
ecount 2820
supercluster 181
annotations_summary 24.44% Class_I/LINE:LINE-RH
pair_completeness 0.415876777251185
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000836820083682008
satellite_probability 5.57078696969618e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RH LINE LINE-RH 292 0.24

clusters with similarity:

Cluster Number of similarity hits
61 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
61 76 0.0416
1390 8 0.0305
2220 6 0.0234
2610 6 0.0236
3820 6 0.0237
9190 3 0.0119
20700 3 0.012
21500 3 0.0121
33500 3 0.0121
3050 2 0.00786
4700 2 0.00792
6190 2 0.00791
8950 2 0.00802
10100 2 0.008
11300 2 0.00802
11300 2 0.00805
13700 2 0.00803
16200 2 0.00803
17600 2 0.00805
18400 2 0.00802
21200 2 0.00803
23000 2 0.00806
24100 2 0.00803
24300 2 0.00803
27800 2 0.00803
33700 2 0.00808
38100 2 0.00808
39900 2 0.00805
40400 2 0.00805
42900 2 0.00808
43800 2 0.00808
45400 2 0.00806
57200 2 0.00806
82900 2 0.00806
102000 2 0.00808
118000 2 0.00808
228000 2 0.00808
232000 2 0.00808
236000 2 0.00808
264000 2 0.00808
266000 2 0.00808
311000 2 0.00808
315000 2 0.00808
322000 2 0.00808
327000 2 0.00808
337000 2 0.00808
349000 2 0.00808
15 1 0.000393
17 1 0.00017
29 1 0.000502
30 1 0.000266
31 1 0.000194
56 1 0.00214
65 1 0.000669
98 1 0.000903
123 1 0.000801
145 1 0.000614
149 1 0.0011
162 1 0.000716
170 1 0.00077
178 1 0.00142
179 1 0.0012
226 1 0.00221
393 1 0.0035
2690 1 0.00393
3650 1 0.00394
4220 1 0.00397
4720 1 0.00398
5060 1 0.00398
7060 1 0.00404
8790 1 0.00404
10200 1 0.00402
10600 1 0.00402
17600 1 0.00404
18500 1 0.00402
18900 1 0.00404
21200 1 0.00403
22200 1 0.00403
22300 1 0.00402
22800 1 0.00403
25300 1 0.00402
26700 1 0.00403
28900 1 0.00402
33200 1 0.00402
36300 1 0.00404
36900 1 0.00402
37100 1 0.00404
38000 1 0.00404
38600 1 0.00404
39300 1 0.00402
44000 1 0.00402
45500 1 0.00403
46500 1 0.00405
47000 1 0.00403
55500 1 0.00403
60900 1 0.00403
61700 1 0.00405
67300 1 0.00403
68200 1 0.00403
69200 1 0.00403
73800 1 0.00405
74300 1 0.00403
74500 1 0.00403
77900 1 0.00405
80800 1 0.00403
94200 1 0.00404
96400 1 0.00404
99400 1 0.00404
109000 1 0.00404
128000 1 0.00404
130000 1 0.00404
136000 1 0.00404
146000 1 0.00404
149000 1 0.00404
150000 1 0.00404
163000 1 0.00404
171000 1 0.00404
175000 1 0.00404
180000 1 0.00404
188000 1 0.00404
194000 1 0.00404
198000 1 0.00404
205000 1 0.00404
206000 1 0.00404
229000 1 0.00404
234000 1 0.00404
240000 1 0.00404
244000 1 0.00404
247000 1 0.00404
259000 1 0.00404
305000 1 0.00404
311000 1 0.00404
314000 1 0.00404
343000 1 0.00404

CL292 ----> CL61

image

No. of shared pairs: :76