Cluster no. 297

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Cluster is part of supercluster: 188

Cluster characteristics:

size 1023
size_real 1023
ecount 5864
supercluster 188
annotations_summary
pair_completeness 0.623809523809524
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000977517106549365
satellite_probability 5.75854876097884e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
126 12

clusters connected through mates:

Cluster Number of shared
read pairs
k
269 20 0.0802
3330 5 0.04
8160 4 0.0329
23100 4 0.0331
17 3 0.000521
49 3 0.00171
126 3 0.00245
13100 3 0.0248
2 2 0.000359
152 2 0.0011
153 2 0.00144
12400 2 0.0166
14500 2 0.0164
19700 2 0.0166
31400 2 0.0167
45700 2 0.0167
305000 2 0.0167
324000 2 0.0167
3 1 0.000274
4 1 0.00029
6 1 0.000262
8 1 0.000604
9 1 0.000373
10 1 0.000692
11 1 0.00028
12 1 0.000245
18 1 0.000532
21 1 0.000421
22 1 0.000363
24 1 0.000323
26 1 0.000471
43 1 0.000379
45 1 0.00037
50 1 0.000588
61 1 0.000588
62 1 0.000367
63 1 0.00033
74 1 0.000655
81 1 0.000435
82 1 0.000933
85 1 0.00071
87 1 0.000718
91 1 0.0013
113 1 0.000728
118 1 0.00111
141 1 0.000749
286 1 0.00209
420 1 0.00549
1120 1 0.00791
9880 1 0.0082
12300 1 0.0083
15800 1 0.00833
25200 1 0.00833
28100 1 0.00833
36700 1 0.00837
39800 1 0.00837
54700 1 0.0084
67500 1 0.00833
78300 1 0.0084
92500 1 0.00837
112000 1 0.00837
149000 1 0.00837
150000 1 0.00837
152000 1 0.00837
153000 1 0.00837
191000 1 0.00837
196000 1 0.00837
201000 1 0.00837
209000 1 0.00837
239000 1 0.00837
256000 1 0.00837
309000 1 0.00837
332000 1 0.00837

CL297 ----> CL269

image

No. of shared pairs: :20