Cluster no. 301

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Cluster is part of supercluster: 192

Cluster characteristics:

size 960
size_real 960
ecount 3924
supercluster 192
annotations_summary
pair_completeness 0.641025641025641
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00104166666666667
satellite_probability 4.28947468612038e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
83 14
135 2
40 1
106 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
83 53 0.0421
106 44 0.03
135 3 0.00287
17 2 0.000348
23 2 0.000842
59 2 0.00172
214 2 0.00481
112000 2 0.0189
240000 2 0.0189
253000 2 0.0189
3 1 0.000275
4 1 0.000291
10 1 0.000698
12 1 0.000246
13 1 0.000659
16 1 0.000389
33 1 0.000728
40 1 0.00028
51 1 0.000346
60 1 0.000878
67 1 0.000456
69 1 0.000888
76 1 0.00071
79 1 0.000409
99 1 0.00131
130 1 0.000476
133 1 0.000357
134 1 0.000752
140 1 5e-04
163 1 0.000735
175 1 0.00147
176 1 0.00171
205 1 0.00137
222 1 0.00213
239 1 0.00244
276 1 0.00204
6810 1 0.00901
7380 1 0.00939
53500 1 0.00948
66900 1 0.00939
75100 1 0.00948
86000 1 0.00943
259000 1 0.00943

CL301 ----> CL83

image

No. of shared pairs: :53

CL301 ----> CL106

image

No. of shared pairs: :44