Cluster no. 319

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Cluster is part of supercluster: 208

Cluster characteristics:

size 689
size_real 689
ecount 1924
supercluster 208
annotations_summary 19.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT
0.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-PROT
pair_completeness 0.472222222222222
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00145137880986938
satellite_probability 3.54668226065428e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatII Ty3-PROT TatII Ty3-PROT 131 0.1901
TatIV_Ogre Ty3-PROT TatIV_Ogre Ty3-PROT 1 0.0015

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1010 15 0.101
2000 9 0.0669
1800 6 0.0444
356 5 0.023
15 3 0.00124
17800 3 0.0237
22900 3 0.0238
80100 2 0.016
129000 2 0.0161
155000 2 0.0161
180000 2 0.0161
283000 2 0.0161
324000 2 0.0161
3 1 0.000273
9 1 0.000373
17 1 0.000173
22 1 0.000362
24 1 0.000323
63 1 0.00033
85 1 0.000708
95 1 0.000952
96 1 0.000916
102 1 0.000416
143 1 0.000777
189 1 0.000935
208 1 0.00194
492 1 0.00588
1610 1 0.00749
3770 1 0.00775
3840 1 0.00778
9300 1 0.008
9670 1 0.00787
15000 1 0.00794
31100 1 0.00797
53600 1 0.00806
58100 1 0.00806
68200 1 0.00806
73900 1 0.008
93800 1 0.00803
106000 1 0.00803
121000 1 0.00803
153000 1 0.00803
161000 1 0.00803
174000 1 0.00803
177000 1 0.00803
180000 1 0.00803
209000 1 0.00803
220000 1 0.00803
234000 1 0.00803
287000 1 0.00803

CL319 ----> CL1012

image

No. of shared pairs: :15