Cluster no. 324

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Cluster is part of supercluster: 212

Cluster characteristics:

size 659
size_real 659
ecount 1781
supercluster 212
annotations_summary 5.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.15% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.372916666666667
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00151745068285281
satellite_probability 8.09461165944467e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 1 0.0015
TatV Ty3-GAG TatV Ty3-GAG 33 0.0501

clusters with similarity:

Cluster Number of similarity hits
24 2

clusters connected through mates:

Cluster Number of shared
read pairs
k
24 43 0.0138
696 11 0.0608
872 6 0.0347
6140 5 0.0323
1960 3 0.019
17400 3 0.0195
33800 3 0.0197
70 2 0.00204
130 2 0.000932
9880 2 0.013
13600 2 0.0131
56200 2 0.0132
117000 2 0.0132
269000 2 0.0132
6 1 0.00026
40 1 0.000276
46 1 0.000599
48 1 0.000303
65 1 0.000715
67 1 0.000447
74 1 0.000641
87 1 0.000702
94 1 0.00225
123 1 0.000867
126 1 0.000795
159 1 0.00107
182 1 0.00109
186 1 0.000714
189 1 0.000912
194 1 0.00306
223 1 0.0021
229 1 0.00132
373 1 0.00394
673 1 0.0056
2350 1 0.00623
5150 1 0.00641
8740 1 0.00651
9020 1 0.00647
19200 1 0.00651
30500 1 0.0066
38200 1 0.00656
49100 1 0.00662
60600 1 0.00658
61300 1 0.00662
68100 1 0.00662
75500 1 0.00658
81800 1 0.00658
168000 1 0.0066
178000 1 0.0066
196000 1 0.0066
228000 1 0.0066
256000 1 0.0066
304000 1 0.0066
336000 1 0.0066
344000 1 0.0066

CL324 ----> CL24

image

No. of shared pairs: :43

CL324 ----> CL696

image

No. of shared pairs: :11