Cluster no. 327

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Cluster is part of supercluster: 216

Cluster characteristics:

size 621
size_real 621
ecount 2256
supercluster 216
annotations_summary 0.32% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
pair_completeness 0.522058823529412
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00161030595813205
satellite_probability 2.0897667525813e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-GAG Ivana Ty1-GAG 2 0.0032

clusters connected through mates:

Cluster Number of shared
read pairs
k
241 19 0.0506
7840 3 0.0297
12800 2 0.0201
86800 2 0.0203
160000 2 0.0203
188000 2 0.0203
223000 2 0.0203
248000 2 0.0203
21 1 0.000425
22 1 0.000366
23 1 0.000422
25 1 0.000535
31 1 2e-04
43 1 0.000382
48 1 0.000308
66 1 0.000353
88 1 0.000426
163 1 0.000739
179 1 0.00146
188 1 0.00491
223 1 0.00236
249 1 0.00293
362 1 0.00612
485 1 0.00725
2930 1 0.00971
5120 1 0.0099
7790 1 0.0099
9220 1 0.00985
10800 1 0.00995
23500 1 0.01
34200 1 0.0102
53500 1 0.0101
54200 1 0.0101
59400 1 0.0102
96100 1 0.0102
103000 1 0.0102
127000 1 0.0102
140000 1 0.0102
149000 1 0.0102
151000 1 0.0102
272000 1 0.0102
283000 1 0.0102
337000 1 0.0102

CL327 ----> CL241

image

No. of shared pairs: :19