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Published Workflows | admin | read preparation

Galaxy Workflow ' read preparation'

Annotation: preparation of paired reads for sequence clustering

StepAnnotation
Step 1: FASTQ Groomer
select at runtime
Show Advanced Options
Sanger (recommended)
ASCII
Do not Summarize Input (faster)
Step 2: FASTQ Groomer
select at runtime
Show Advanced Options
Sanger (recommended)
ASCII
Do not Summarize Input (faster)
Step 3: Filter FASTQ
Output dataset 'output_file' from step 1
20.0
0.0
0
False
Quality Filter on a Range of Bases
Step 4: Filter FASTQ
Output dataset 'output_file' from step 2
0
0
20.0
0.0
95
False
Quality Filter on a Range of Bases
Step 5: FASTQ interlacer
Output dataset 'output_file' from step 3
Output dataset 'output_file' from step 4
Step 6: FASTQ to FASTA
Output dataset 'outfile_pairs' from step 5