None
Published Workflows | jirka | Workflow constructed from history 'Example history #2'

Galaxy Workflow ' Workflow constructed from history 'Example history #2''


StepAnnotation
Step 1: Input dataset
select at runtime
Step 2: Input dataset
select at runtime
Step 3: Input dataset
select at runtime
Step 4: Input dataset
select at runtime
Step 5: Input dataset
select at runtime
Step 6: Input dataset
select at runtime
reference repeat database
Step 7: Concatenate datasets
Output dataset 'output' from step 1
Datasets
Dataset 1
Output dataset 'output' from step 2
Step 8: Concatenate datasets
Output dataset 'output' from step 3
Datasets
Dataset 1
Output dataset 'output' from step 4
Dataset 2
Output dataset 'output' from step 5
Step 9: FASTQ Groomer
Output dataset 'out_file1' from step 7
Sanger
Hide Advanced Options
Step 10: FASTQ Groomer
Output dataset 'out_file1' from step 8
Sanger
Hide Advanced Options
Step 11: Trim sequences
Output dataset 'output_file' from step 9
1
200
Step 12: Trim sequences
Output dataset 'output_file' from step 10
1
200
Step 13: Filter by quality
Output dataset 'output' from step 11
10
95
Step 14: Filter by quality
Output dataset 'output' from step 12
10
95
Step 15: Read name affixer
Output dataset 'output' from step 13
0B
1
Step 16: Read name affixer
Output dataset 'output' from step 14
4B
1
Step 17: FASTQ to FASTA
Output dataset 'output' from step 15
yes
no
Step 18: FASTQ to FASTA
Output dataset 'output' from step 16
yes
no
Step 19: Filter sequences by length
Output dataset 'output' from step 17
200
200
Step 20: Filter sequences by length
Output dataset 'output' from step 18
200
200
Step 21: Sequence sampling
Output dataset 'output' from step 19
100000
10
False
Step 22: Sequence sampling
Output dataset 'output' from step 20
100000
10
False
Step 23: Concatenate datasets
Output dataset 'output' from step 21
Datasets
Dataset 1
Output dataset 'output' from step 22
Step 24: Clustering
Output dataset 'out_file1' from step 23
False
True
2
55
0.1
Viridiplantae
True
Output dataset 'output' from step 6
False
50