DANTE_LTR
LTR retrotransposons Galaxy CLI
Identifies complete LTR retrotransposons from DANTE domain hits and classifies them into lineages
Extends DANTE domain hits into complete LTR retrotransposons: it locates the long terminal repeats flanking a set of domains and validates the element’s structure. Elements are assigned to lineages, so the annotation distinguishes families rather than reporting undifferentiated LTR elements.
Output
- A GFF3 file of complete elements, with their internal features and lineage
- A per-element table of structural details
- A FASTA library of the elements, for use as a repeat library
How to cite
- Novák P., Hoštáková N., Neumann P., Macas J. (2024) DANTE and DANTE_LTR: lineage-centric annotation pipelines for long terminal repeat retrotransposons in plant genomes. NAR Genomics and Bioinformatics 6. doi:10.1093/nargab/lqae113