| 8:00 – 9:00 |
Registration |
| 09:00-9:15 |
Welcome & Workshop Introduction (J. Macas) |
| 09:15-10:00 |
REXdb database and DANTE pipeline (P. Neumann, P, Novak) |
| 10:00-10:30 |
DANTE_LTR pipeline (P, Novak) |
| 10:30 |
Coffee break
|
| 11:00-11:30 |
DANTE_TIR pipeline (P. Novak) |
| 11:30-12:15 |
TideCluster pipeline (J. Macas) |
| 12:30 |
Lunch |
| 13:30 – (18:00) |
Practical training I (J. Macas, P. Novák, P. Neumann)
- Genome annotation tools
- REXdb and DANTE, detection and classification of protein domains encoded by mobile elements
- Structure-based annotation of complete LTR-retrotransposons and DNA transposons using DANTE_LTR and DANTE_TIR
- Container-based analysis of all repeat types – implementation and output structure
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