Tools

Tools include in RepeatExplorer Suite:

Identification of repeats in NGS short reads:

  • TAREAN – TAndem REpeat ANalyzer
  • RepeatExplorer2 – Repeat discovery and characterization using graph based sequence clustering

Annotation of repeats in assemblies:

  • DANTEDomain based ANnotation of Transposable Elements
  • PROFREP – Repeat annotation based on library of repeats generated by RepeatExplorer2