Tools include in RepeatExplorer Suite:

Identification of repeats in NGS short reads:

• TAREAN – TAndem REpeat ANalyzer
• RepeatExplorer2 – Repeat discovery and characterization using graph based sequence clustering

Annotation of repeats in assemblies:

• DANTE – Domain based ANnotation of Transposable Elements
• PROFREP – Repeat annotation based on library of repeats generated by RepeatExplorer2