Tools included in RepeatExplorer Suite:

Identification of repeats in NGS short reads:

• TAREAN – TAndem REpeat ANalyzer
• RepeatExplorer2 – Repeat discovery and characterization using graph based sequence clustering

Annotation of repeats in assemblies:

• DANTE – Domain based ANnotation of Transposable Elements
• DANTE_LTR – Tool for identifying complete LTR retrotransposons based on analysis of protein domains identified with the DANTE tool.
• PROFREP – Repeat annotation based on library of repeats generated by RepeatExplorer2
• TideCluster – Tool for identification and annotation of tandem repeats