Tools

Tools included in RepeatExplorer Suite:

Identification of repeats in NGS short reads:

  • TAREAN – TAndem REpeat ANalyzer
  • RepeatExplorer2 – Repeat discovery and characterization using graph based sequence clustering

Annotation of repeats in assemblies:

  • DANTEDomain based ANnotation of Transposable Elements
  • DANTE_LTR –¬†Tool for identifying complete LTR retrotransposons based on analysis of protein domains identified with the DANTE tool.
  • PROFREP – Repeat annotation based on library of repeats generated by RepeatExplorer2
  • TideCluster – Tool for identification and annotation of tandem repeats