Tools include in RepeatExplorer Suite:
Identification of repeats in NGS short reads:
- TAREAN – TAndem REpeat ANalyzer
- RepeatExplorer2 – Repeat discovery and characterization using graph based sequence clustering
Annotation of repeats in assemblies:
- DANTE – Domain based ANnotation of Transposable Elements
- PROFREP – Repeat annotation based on library of repeats generated by RepeatExplorer2