8:00 – 9:00 |
Registration |
09:15 |
Principles and applications of graph-based repeat clustering (J. Macas) |
10:00 |
RepeatExplorer pipeline (P. Novák) |
10:30 |
Coffee break
|
11:00 |
REXdb database and transposon classification using conserved protein domains (P. Neumann) |
11:30 |
Using RepeatExplorer output for repeat annotation and quantification (J. Macas) |
11:50 |
Additional RE tools (P. Novák) |
12:30 |
Lunch |
13:30 – (18:00) |
Practical training I (J. Macas, P. Novák, P. Neumann)
- design of sequencing and repeat analysis experiments
- introduction to Galaxy environment
- quality control and pre-processing of NGS reads, dealing with various read formats
- setting up clustering analysis
- comparative clustering of multiple samples
|
19:00 – 22:00 |
Dinner at CITYgastro restaurant
|