Domain based ANnotation of Transposable Elements (DANTE) uses database of Viridiplantae (Metazoa in progress) protein domains derived from transposable elements (Neumann, in prep.) Domains searching is accomplished engaging LASTAL alignment tool. Domains are subsequently annotated and classified using phylogenetic approach.
How to use DANTE:
- Use public Galaxy-based server at https://repeatexplorer-elixir.cerit-sc.cz/. The server is provided in frame of the Elixir CZ project and is maintained by CESNET and CERIT-SC. Simple registration is required to use this service.
- Install a local instance of the pipeline using its source code available from bitbucket repository.
Example output from DANTE
Annotation of short fragment from Musa accuminata genome visualized using Jbrowse genome viewer is here.